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OmniCorp
tursynay edited this page Dec 15, 2023
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Description: OmniCorp is a literature co-occurrence database created by ranking team. It runs a named entity recognizer and entity linking system over publicly available pubmed abstracts to find all biolink-relevant entities that occur within each abstract. It then normalizes these entities using the node normalizer.
The database then contains the number of publications that each entity appears in, as well as the number of publications that each pair of entities co-occur in. When OmniCorp is queried, it can add to a TRAPI message
- publication counts as node properties to each node
- literature co-occurrence edges connecting all nodes within an answer.
Example edge:
Additional Links: https://github.com/NCATS-Gamma/omnicorp