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Annotator Service
Chunlei Wu edited this page Jul 23, 2024
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The Annotator service is a centralized component in the Translator ecosystem. It provides rich annotation fields for any given biomedical entities. These annotations can then be consumed by multiple Translator components like ARS, UI and O&O.
Annotator service can annotate a single entity by its CURIE ID via a GET request:
GET https://annotator.ci.transltr.io/NCBIGene:695
Annotator service can take a valid TRAPI response as the input and append the annotation fields for each node in the response:
POST https://annotator.ci.transltr.io/
<TRAPI response passed as a JSON body>
Issues with the Annotator Service can be reported and viewed at the services github repository here.
The service can run locally or be built into a docker container, deployable using docker or kubernetes. Details are given in the github README
- Running Instance: https://annotator.ci.transltr.io
- Github Repository: https://github.com/biothings/biothings_annotator
- SmartAPI Registration: http://smart-api.info/registry?q=5a4c41bf2076b469a0e9cfcf2f2b8f29
- Translator PROD Instance: https://annotator.transltr.io (pending)