Knowledge Collaboratory KP

Original Source: Knowledge Collaboratory KP

Description: The Knowledge Collaboratory KP allows users to publish and query Translator compliant claims, such as clinical drug indications and off-label drug uses, in the Nanopublications network. The Knowledge Collaboratory includes:

A Translator Reasoner API to query the published claim
A web UI, the Nanobench, to publish Translator-compliant claims to the Nanopublications network, such as drug indications with their medical context.
Experimental: retrieve data from the Nanopublications network as KGX dumps

Data sources

The Nanopublications network to store and query claims for the Knowledge Collaboratory
- Currently includes data signed and published in the Nanopublications network, including:
  - Drug actions with their medical context
  - Drug-disease associations claims

Technical User Guide The Knowledge Collaboratory API is maintained by the Clinical Data Knowledge Provider

Issues can be consulted and created in the knowledge-collaboratory-api GitHub repository: https://github.com/MaastrichtU-IDS/knowledge-collaboratory-api/issues
You can easily deploy your own instance using the Docker image and docker-compose.yml provided, instructions can be found in the README.md.

Mode of Access

Translator Reasoner API, registered as a SmartAPI
- Bespoke OpenAPI at https://api.collaboratory.semanticscience.org

Knowledge Sources Accessed

The Nanopublications network to store and query claims for the Knowledge Collaboratory
SRI Name Resolution API to suggests relevant identifiers when a user publish a claim using the Knowledge Collaboratory web UI.

Source Code