tools_sequence_to_fastq.cwl

Documentation for sequence_to_fastq.cwl

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Overview

Picard: BAM to FASTQ

Docker Requirement

broadinstitute/picard:2.23.6

Inputs

Name	Label	Description	Type	Secondary Files
bam			File?
fastq1			File?
fastq2			File?
unzip_fastqs		If true, and the input sequence contains gzipped fastqs, they will be unzipped	boolean?

Outputs

Name	Label	Description	Type	Secondary Files
fastq1			File
fastq2			File