subworkflows_align.cwl

Documentation for align.cwl

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Overview

Unaligned to aligned BAM

Inputs

Name	Label	Description	Type	Secondary Files
bam			File
reference			['string', 'File']	['.fai', '^.dict', '.amb', '.ann', '.bwt', '.pac', '.sa']
readgroup			string

Outputs

Name	Label	Description	Type	Secondary Files
tagged_bam			File

Steps

Name	CWL Run
align_and_tag	tools/align_and_tag.cwl