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tools_collect_wgs_metrics.cwl
Travis CI User edited this page Oct 14, 2020
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collect WGS metrics
broadinstitute/picard:2.23.6
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| sample_name | string? | |||
| bam | File | ['^.bai'] | ||
| reference | ['string', 'File'] | ['.fai', '^.dict'] | ||
| intervals | File? | |||
| minimum_mapping_quality | Minimum mapping quality for a read to contribute coverage. | int? | ||
| minimum_base_quality | Minimum base quality for a base to contribute coverage. (N bases are considered to have negative infinite quality and will be excluded regardless of this value.) | int? |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| wgs_metrics | File |