tools_read_backed_phasing.cwl

Documentation for read_backed_phasing.cwl

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Overview

Read-backed phasing

Docker Requirement

mgibio/gatk-cwl:3.6.0

Inputs

Name	Label	Description	Type	Secondary Files
reference			['string', 'File']	['.fai', '^.dict']
bam			File	${if (self.nameext === ".bam") {return self.basename + ".bai"} else {return self.basename + ".crai"}}
vcf			File	['.tbi']

Outputs

Name	Label	Description	Type	Secondary Files
phased_vcf			File