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tools_filter_known_variants.cwl
APipe Tester edited this page Jul 14, 2021
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Adds an INFO tag (VALIDATED) flagging variants in the pipeline vcf present in a previously validated vcf file
mgibio/bcftools-cwl:1.12
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| vcf | Each variant in this file that is also in the validated vcf file (if supplied) will be marked with a VALIDATED flag in its INFO field | File | ['.tbi'] | |
| validated_variants | A vcf of previously discovered variants to be marked in the pipeline vcf; if not provided, this tool does nothing but rename the input vcf | File? | ['.tbi'] |
| Name | Label | Description | Type | Secondary Files |
|---|---|---|---|---|
| validated_annotated_vcf | File | ['.tbi'] |