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Travis CI User edited this page Dec 4, 2019 · 4 revisions

Documentation for apply_bqsr.cwl

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Overview

apply BQSR

Docker Requirement

mgibio/gatk-cwl:3.6.0

Inputs

Name Label Description Type Secondary Files
reference ['string', 'File'] ['.fai', '^.dict']
bam File ['.bai']
bqsr_table File
output_name string?

Outputs

Name Label Description Type Secondary Files
bqsr_bam File ['^.bai']

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