subworkflows_cellranger_mkfastq_and_count.cwl

Documentation for cellranger_mkfastq_and_count.cwl

This page is auto-generated. Do not edit.

Overview

running cellranger mkfastq and count

Inputs

Name	Label	Description	Type	Secondary Files
bcl_directory			Directory
chemistry			string?
reference			Directory
sample_name			string
simple_sample_csv			File

Outputs

Name	Label	Description	Type	Secondary Files
counts_out_dir			Directory
fastqs			Directory
samplesheet			File

Steps

Name	CWL Run
mkfastq	tools/cellranger_mkfastq.cwl
count	tools/cellranger_count.cwl