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Microbiome Helper 2 Making Kraken2 and Bracken databases
Robyn Wright edited this page Jun 4, 2025
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1 revision
Authors: Robyn Wright,
Modifications by: NA
Based on initial versions by: NA
Please note: We are still testing/developing this so use with caution :)
- Please feel free to post a question on the Microbiome Helper google group if you have any issues.
- General comments or inquires about Microbiome Helper can be sent to [email protected].
Useful Links
Microbiome Helper 2
- Overview
- Tutorial data
- QIIME2 marker gene workflow
- QIIME2 basic statistics and visualisation
- Statistical analysis workflow in R
- Metagenomics first steps
- Taxonomic annotation with Kraken 2
- Getting a tree for metagenomic reads
- MAG assembly, binning, and curation with Anvi'o
Tutorials