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    8 repositories

    • CRX-Active-Learning

      Public
      Deep learning model for the regulatory grammar of CRX-dependent enhancers and silencers and code to reproduce analyses related to the manuscript
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•5•0•0•Updated Dec 4, 2024Dec 4, 2024

    • website

      Public
      Repository for Cohen Lab website files
      HTML
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • preimage

      Public
      Active learning code for designing synthetic cis-regulatory sequences
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•1•2•0•Updated Oct 17, 2024Oct 17, 2024

    • crx-dms-manuscript

      Public
      Code for data analysis relevant to CRX DMS project
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 2, 2024Sep 2, 2024

    • scMPRA

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•0•Updated May 12, 2024May 12, 2024

    • castools

      Public
      Command line tool for the CAS project
      Jupyter Notebook
      •
      MIT License
      •1•3•0•0•Updated Feb 4, 2024Feb 4, 2024

    • retinopathy-manuscript

      Public
      Code for data analysis relevant to CRX retinopathy project
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 17, 2024Jan 17, 2024

    • CRX-Information-Content

      Public
      Code for processing and analyzing massively parallel reporter assay data and computing information content of cis-regulatory sequences.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•0•Updated Nov 24, 2021Nov 24, 2021