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Issues list

annotate mutations between the inferred root and the reference sequence enhancement New feature or request
#296 opened Nov 20, 2024 by jameshadfield
3
assign-colors scripts are largely identical
#286 opened Nov 3, 2024 by jameshadfield
Reached maximum recursion depth when building phylogenetic trees bug Something isn't working
#282 opened Oct 20, 2024 by mengfeip
3
Move hardcode filter query into configuration files
#273 opened Aug 20, 2024 by huddlej
1
Divergent branches on the mpox build enhancement New feature or request
#271 opened Aug 17, 2024 by BryanTegomoh
1
Mpox Clade I delineation? documentation Improvements or additions to documentation
#265 opened Aug 8, 2024 by woguta
5
Update phylogenetic GH Action workflows
#259 opened Jun 18, 2024 by joverlee521
[phylo] CI workflow DAG includes update_example_data bug Something isn't working
#237 opened Feb 13, 2024 by joverlee521
@joverlee521
fix_tree.py can create invalid tree bug Something isn't working
#232 opened Jan 22, 2024 by joverlee521
@corneliusroemer
1
Potentially include year-only sequences enhancement New feature or request
#231 opened Jan 21, 2024 by corneliusroemer
Collection issue for things to bear in mind when moving a workflow to a folder
#202 opened Sep 27, 2023 by corneliusroemer
Reverse complement reverse-complemented sequences in ingest to reduce downstream complications enhancement New feature or request
#192 opened Sep 22, 2023 by corneliusroemer
It seems that there is no Chinese sequence included? documentation Improvements or additions to documentation
#160 opened Jul 9, 2023 by Memorablea
Transmission Line Visualization Feature in Monkeypox Pipeline, Similar to the ncov Build enhancement New feature or request
#156 opened Jun 7, 2023 by AroobAlhumaidy
Additionally produce Zstd compressed outputs in ingest enhancement New feature or request
#137 opened Nov 8, 2022 by corneliusroemer
Add accession as tip label option -> easier for getting exclusion accessions quickly enhancement New feature or request
#132 opened Oct 16, 2022 by corneliusroemer
1
Ingest: differentiate date_released and date_submitted enhancement New feature or request
#104 opened Aug 18, 2022 by joverlee521
1
Ingest: Add alignmentStart/End and/or sequence length to our metadata.tsv enhancement New feature or request
#99 opened Aug 2, 2022 by corneliusroemer
Push aligned sequences up to data.nextstrain.org for download availability enhancement New feature or request
#96 opened Jul 25, 2022 by emmahodcroft
ingest: include url field enhancement New feature or request
#76 opened Jun 21, 2022 by joverlee521
2
ingest: Include more data from GenBank enhancement New feature or request
#68 opened Jun 17, 2022 by chaoran-chen
Support for GISAID data documentation Improvements or additions to documentation
#63 opened Jun 16, 2022 by huddlej
3
ingest: Split monolith transform rule enhancement New feature or request
#44 opened Jun 8, 2022 by joverlee521
ingest: thread Slack notifications enhancement New feature or request
#36 opened Jun 7, 2022 by joverlee521
1
ingest: deduplicate sequences using strain names enhancement New feature or request
#33 opened Jun 7, 2022 by joverlee521
1
ProTip! Exclude everything labeled bug with -label:bug.