Ingest: differentiate date_released and date_submitted
#104
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enhancement
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Top right date seems to be Also described by NCBI documentation as "Modification date" |
joverlee521
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Useful for knowing when the record was last updated in NCBI, which @j23414 noted to be the "Modification date".¹ This will ultimately add a new field to the NDJSON output from fetch-from-ncbi-virus, but it should not affect the final metadata output of the ingest pipelines. Ingest pipelines usually define the final metadata output columns in the config and would need to be updated separately. ¹ nextstrain/mpox#104 (comment)
joverlee521
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Useful for knowing when the record was last updated in NCBI, which @j23414 noted to be the "Modification date".¹ This will ultimately add a new field to the NDJSON output from fetch-from-ncbi-virus, but it should not affect the final metadata output of the ingest pipelines. Ingest pipelines usually define the final metadata output columns in the config and would need to be updated separately. ¹ nextstrain/mpox#104 (comment)
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On Slack, @emmahodcroft pointed out that we are labeling the release date as
date_submittedin the metadata TSV. These two dates usually aligned for SARS-CoV-2 sequences, but there is a noticeable difference in monkeypox sequences:Once NCBI Virus adds submission date to their available fields, we can pull and include both dates in the metadata TSV.
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