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Pull requests: lcdb/lcdb-wf

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Pull requests list

Cast genome count to string in macs2 wrapper
#430 opened Jan 24, 2025 by menoldmt Loading…
[DRAFT] refactor
#428 opened Jan 3, 2025 by daler • Draft
RNA-seq Snakefile MultiQC Stacked Bar Chart Expression Module
#426 opened Dec 16, 2024 by menoldmt Loading…
Hook test_suite.py into lcdb-wf-test
#421 opened Nov 21, 2024 by b-full Loading…
Fix relative path issue with paths in config
#420 opened Nov 14, 2024 by b-full Loading…
Account for different 'layout's in sampletable
#419 opened Nov 8, 2024 by b-full Loading…
1
V1.12rc
#416 opened Oct 18, 2024 by daler Loading…
added Error documentation section to rnaseq-rmd.rst and hyperlnked to it in helpers.R error message
#402 opened Jun 3, 2024 by menoldmt Loading…
1
Work in progress: CircleCI inline orbs enhancement
#385 opened Jul 28, 2023 by aliciaaevans Loading…
2
copying vc docs rst
#373 opened Jun 17, 2023 by fridells51 Loading…
variant calling workflow + testing
#371 opened Jun 1, 2023 by fridells51 Loading…
[WIP] GitHub Actions test
#364 opened Jan 25, 2022 by daler Loading…
[WIP] Large dataset test branch
#316 opened Sep 24, 2020 by esnaultc • Draft
[WIP] include diffbind in new downstream chipseq
#315 opened Sep 18, 2020 by daler • Draft
[WIP] added helper function for no-replicate heatmaps
#285 opened May 12, 2020 by hertafeldsr • Draft
[WIP] Helper function to remove batch effects
#280 opened May 8, 2020 by hertafeldsr • Draft
6
[WIP] WES workflow
#242 opened Dec 8, 2019 by daler • Draft
[WIP] add reports to rnaseq-wf
#210 opened Aug 23, 2019 by esnaultc • Draft
Fix 178 [WIP]
#209 opened Aug 22, 2019 by daler • Draft
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