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55 Open 44 Closed
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Issues list

Hanging on setting up Trinity environment
#162 opened Apr 29, 2021 by matthewabirk
stuck downloading packages when testing
#160 opened Sep 28, 2020 by AntonioBaeza
5
Salmon Version Errors
#158 opened Feb 5, 2020 by zdellaert
lastdb version 992 (dammit)
#157 opened Feb 5, 2020 by zdellaert
NameError: name 'pygments' is not defined
#156 opened Jan 23, 2020 by olar785
How to run DESeq2 with 3 treatments?
#152 opened Jun 12, 2019 by matthewabirk
3
Pandas was not already installed
#151 opened Jun 12, 2019 by prvasquez
another snakemake based toolkit
#150 opened Jun 2, 2019 by ctb
1
--rerun-incomplete flag not working
#147 opened May 10, 2019 by matthewabirk
1
suggestion, recorded tutorial
#145 opened May 6, 2019 by johnsolk
collapse get_data and get_reference into one rule
#144 opened May 6, 2019 by taylorreiter
2
modular versioning
#138 opened Apr 12, 2019 by bluegenes
use dammit annotations for DE (collapse "genes" based on annots)
#131 opened Apr 3, 2019 by bluegenes
5
simplify config merge and check?
#124 opened Mar 20, 2019 by bluegenes
can we trap snakemake Python tracebacks and output them to a file?
#123 opened Mar 18, 2019 by ctb
1
add conda recipe
#121 opened Mar 16, 2019 by bluegenes
update conda envs
#119 opened Mar 15, 2019 by bluegenes
2
split tximport from deseq2
#115 opened Mar 13, 2019 by bluegenes
reference ARMOR
#114 opened Mar 10, 2019 by ctb
1
binderizing eelpond
#113 opened Mar 9, 2019 by ctb
1
provide "getting started" tutorials for assembly/annotation AND for diffexp AND for both
#112 opened Mar 9, 2019 by ctb
update documentation on samples.tsv
#111 opened Mar 9, 2019 by ctb
1
meta issue for high-level error checking
#110 opened Mar 9, 2019 by ctb
2
unclear errors when config yaml file is badly formatted
#107 opened Mar 9, 2019 by ctb
1
running diffexp on examples/nema.yaml doesn't do anything?
#103 opened Mar 9, 2019 by ctb
3
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