NameError: name 'pygments' is not defined

[olar785]

Hi,
Running the elvers test command worked perfectly but when I tried a custom workflow
I received the following error at the end of it, during the report creation.
NameError: name 'pygments' is not defined
I realised that in the init.py file in my miniconda3/envs/elvers-env/python3.6/site-packages/snakemake/report/ there was no import of the pygments module. Adding "import pygments" to the file fixed it but then I also had the following error:
AttributeError: module 'pygments' has no attribute 'utils'
This was fixed by changing, in the same file, pygments.utils.ClassNotFound to pygments.util.ClassNotFound
My whole elvers workflow works fine now but I thought you should know in order to fix the conda elvers package.
Best,
Olivier