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Reproducible workflows with Docker

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Keiichiro Ono edited this page Jul 12, 2016 · 2 revisions

Reproducible workflows with Docker

Combination of Cytoscape/cyREST, Jupyter Notebook, and Docker is a powerful tool to build reproducible workflows for data analysis and visualization. The following workshops

Introduction

(TBD)

Past Workshops

  • SDCSB Cytoscape Advanced Tutorial 2016: Reproducible Workflow with Cytoscape and Jupyter Notebook
  • SDCSB Cytoscape Advanced Tutorial 2015: Reproducible Data Visualization Workflow with Cytoscape and IPython Notebook
  • VIZBI 2015 Tutorial: Cytoscape, IPython, Docker and Reproducible Data Visualization Workflow

© 2014-2016 The Cytoscape Consortium

Developed and Maintained by Keiichiro Ono (UC, San Diego Trey Ideker Lab)

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Introduction

Setup Guide

CyREST in the Cytoscape App Store

Trying Cytoscape Automation

Example Scripts and Advanced Topics

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