Language-agnostic RESTful API for Cytoscape
We need your support to make this project sustainable. Please cite the following paper when you use cyREST in your projects:
Ono, Keiichiro, et al. CyREST: Turbocharging Cytoscape Access for External Tools via a RESTful API. F1000Research 4 (2015).
From Cytoscape 3.3.0, cyREST is a Core App:
- You don't have to install cyREST manually. It is a part of core distribution
- Although it is part of core distribution, you will get updates after 3.3.0 release
An app to control Cytoscape from RStudio, Jupyter Notebook, Node.js or other programming languages.
- CyREST API docs are available within Cytoscape main menu through the
Help → Automation sub-menu. - cyREST Wiki
Build instructions and notes are included in the Developers Guide
Please send your feature requests to our mailing list.
Please report the problems to our issue tracker:
And of course, pull requests are always welcome!
- Source Code: The MIT license
- Documentation: CC BY-SA 4.0
© 2014-2016 Cytoscape Consortium.
Developed and maintained by Keiichiro Ono, UCSD Trey Ideker Lab.
Note to repository maintainers: Please *DO NOT* move this page ... the Cytoscape Automation paper refers directly to it.