v8.0.3

8.0.3 (2025-11-28)

Performance Improvements

• autobump bio/bbtools/environment.yaml (#4732) (c6be4e5)
• autobump bio/bbtools/environment.yaml (#4746) (3194be4)
• autobump bio/bwa/mem/environment.yaml (#4747) (74cf4e1)
• autobump bio/deseq2/deseqdataset/environment.yaml (#4734) (0f97ec4)
• autobump bio/fgbio/annotatebamwithumis/environment.yaml (#4754) (f14db7b)
• autobump bio/fgbio/callmolecularconsensusreads/environment.yaml (#4750) (f57053f)
• autobump bio/fgbio/collectduplexseqmetrics/environment.yaml (#4749) (3dd6be9)
• autobump bio/fgbio/filterconsensusreads/environment.yaml (#4751) (3bfa1ba)
• autobump bio/fgbio/groupreadsbyumi/environment.yaml (#4755) (54ffc88)
• autobump bio/fgbio/setmateinformation/environment.yaml (#4753) (aae3d07)
• autobump bio/freebayes/environment.yaml (#4752) (ee66f56)
• autobump bio/gseapy/gsea/environment.yaml (#4735) (09c557d)
• autobump bio/last/lastal/environment.yaml (#4737) (2d0d770)
• autobump bio/last/lastdb/environment.yaml (#4736) (0788474)
• autobump bio/orthanq/environment.yaml (#4739) (c412fa3)
• autobump bio/orthanq/environment.yaml (#4756) (1b68010)
• autobump bio/toulligqc/environment.yaml (#4710) (fd41434)
• autobump bio/tximport/environment.yaml (#4741) (ccf4eb0)
• autobump bio/varlociraptor/call-variants/environment.yaml (#4758) (b826040)
• autobump bio/varlociraptor/control-fdr/environment.yaml (#4757) (1fa3cf2)
• autobump bio/varlociraptor/estimate-alignment-properties/environment.yaml (#4759) (76eb5a7)
• autobump bio/varlociraptor/preprocess-variants/environment.yaml (#4761) (d39d252)
• autobump bio/vg/giraffe/environment.yaml (#4760) (54af202)
• autobump utils/csvtk/environment.yaml (#4733) (9b841ed)
• autobump utils/datavzrd/environment.yaml (#4748) (a5d9f5b)
• autobump utils/miller/environment.yaml (#4738) (8d1e5ca)
• update vg wrappers to v1.70 (#4742) (12f2191)

v8.0.2

8.0.2 (2025-11-14)

Performance Improvements

• autobump bio/diamond/blastp/environment.yaml (#4720) (d024305)
• autobump bio/diamond/blastx/environment.yaml (#4721) (f4328a9)
• autobump bio/diamond/makedb/environment.yaml (#4719) (4b76213)
• autobump bio/mosdepth/environment.yaml (#4722) (89cb486)
• autobump bio/orthanq/environment.yaml (#4723) (81d4ce0)
• autobump bio/varlociraptor/call-variants/environment.yaml (#4725) (4d3cdcc)
• autobump bio/varlociraptor/control-fdr/environment.yaml (#4724) (0fc2154)
• autobump bio/varlociraptor/estimate-alignment-properties/environment.yaml (#4726) (e8c3966)
• autobump bio/varlociraptor/preprocess-variants/environment.yaml (#4727) (9cfd9b9)
• Update alignoth report meta wrapper (#4717) (93eb4c8)
• Update alignoth wrapper (#4728) (ad3adc3)

v8.0.1

8.0.1 (2025-11-13)

Performance Improvements

• Update alignoth wrapper (#4715) (305df51)

v8.0.0

8.0.0 (2025-11-11)

⚠ BREAKING CHANGES

• Pin wrapper versions in meta-wrappers; add alignoth_report meta-wrapper (#4678)

Features

• Pin wrapper versions in meta-wrappers; add alignoth_report meta-wrapper (#4678) (df95006)

Bug Fixes

• downgrade bcftools in vep environment (#4713) (f6f3104)

Performance Improvements

• autobump bio/delly/environment.yaml (#4701) (ac0eccc)
• autobump bio/diamond/blastp/environment.yaml (#4696) (69ca46b)
• autobump bio/diamond/blastx/environment.yaml (#4697) (a78f857)
• autobump bio/diamond/makedb/environment.yaml (#4700) (cda63aa)
• autobump bio/gdc-api/bam-slicing/environment.yaml (#4702) (4442ff1)
• autobump bio/mehari/download-clinvar-db/environment.yaml (#4704) (60b7a96)
• autobump bio/mehari/download-transcript-db/environment.yaml (#4703) (c9e468b)
• autobump bio/picard/collectinsertsizemetrics/environment.yaml (#4706) (cc3bf0e)
• autobump utils/datavzrd/environment.yaml (#4699) (0b40b95)

v7.9.1

7.9.1 (2025-11-03)

Bug Fixes

• Add index checks for BAM and reference inputs (#4693) (af7e91d)

Performance Improvements

• Bump datavzrd version (#4691) (744b021)

v7.9.0

7.9.0 (2025-10-31)

Features

• Add Alignoth wrapper (#4676) (fabf863)

Performance Improvements

• autobump bio/alignoth (#4684) (fc34672)
• autobump bio/cutadapt/pe (#4669) (5ca9111)
• autobump bio/cutadapt/se (#4667) (813b1d3)
• autobump bio/diamond/blastp (#4670) (4d49313)
• autobump bio/diamond/blastx (#4671) (48b8fbc)
• autobump bio/diamond/makedb (#4672) (c3ee542)
• autobump bio/emu/abundance (#4688) (e331f6e)
• autobump bio/emu/collapse-taxonomy (#4687) (2b27b8d)
• autobump bio/emu/combine-outputs (#4686) (8e2380b)
• autobump bio/gdc-api/bam-slicing (#4673) (c481c0b)
• autobump bio/mehari/download-clinvar-db (#4674) (042c238)
• autobump bio/mehari/download-transcript-db (#4675) (0abdf9d)
• autobump bio/multiqc (#4689) (4834977)
• autobump geo/rasterio/clip (#4690) (1818819)
• autobump utils/datavzrd (#4685) (bf54d66)
• Bump alignoth version (#4679) (eb370a9)
• Bump alignoth version (#4681) (57251ad)
• Bump alignoth version (#4683) (60860c8)
• Bump utils/datavzrd (#4677) (89e7e87)

v7.8.1

7.8.1 (2025-10-19)

Bug Fixes

• cleanup description of the bwa_mapping meta-wrapper (7649cca)

v7.8.0

7.8.0 (2025-10-18)

Features

• let the displayed version of each wrapper be the latest repo version with changes to that wrapper, instead of just the latest repo version; migrate meta-wrapper to the new pathvars syntax (#4622) (385e7ca)

v7.7.1

7.7.1 (2025-10-17)

Performance Improvements

• autobump bio/emu/abundance (#4660) (d133416)
• autobump bio/emu/collapse-taxonomy (#4662) (6a1e4fb)
• autobump bio/emu/combine-outputs (#4661) (9e04619)
• autobump utils/csvtk (#4658) (c18ac10)

v7.7.0

7.7.0 (2025-10-14)

Features

• add Orthanq wrappers for hla and virus applications (#2640) (5805a2b)

Bug Fixes

• Add OOM check to bbtools (#4623) (502ef25)
• orthanq outputcsv to output folder (#4657) (ad05cdd)

Performance Improvements

• autobump bio/bbtools (#4639) (29e9543)
• autobump bio/encode_fastq_downloader (#4641) (73f2d8c)
• autobump bio/gatk3/baserecalibrator (#4645) (f11dbb9)
• autobump bio/gatk3/indelrealigner (#4644) (d2cb35b)
• autobump bio/gatk3/printreads (#4643) (5954021)
• autobump bio/gatk3/realignertargetcreator (#4646) (baa6e25)
• autobump bio/genomescope (#4642) (bb6e356)
• autobump bio/last/lastal (#4648) (6e940a3)
• autobump bio/last/lastdb (#4647) (5ec863d)
• autobump bio/mehari/annotate-seqvars (#4649) (bf7de05)
• autobump bio/paladin/align (#4650) (83ef7cd)
• autobump bio/paladin/index (#4652) (1b9a197)
• autobump bio/paladin/prepare (#4651) (943dbe6)
• autobump bio/spades/metaspades (#4653) (189beb0)
• autobump bio/vep/plugins (#4655) (0488a2b)
• autobump bio/vsearch (#4654) (65adcaf)
• autobump utils/datavzrd (#4640) (54abde8)