Releases: snakemake/snakemake-wrappers
Releases · snakemake/snakemake-wrappers
v5.2.0
Features
Performance Improvements
- autobump bio/cooltools/dots (#3456) (a97cdfc)
- autobump bio/cooltools/eigs_cis (#3463) (8f8607d)
- autobump bio/cooltools/eigs_trans (#3460) (745bb7b)
- autobump bio/cooltools/expected_cis (#3461) (812e9a2)
- autobump bio/cooltools/expected_trans (#3455) (e91030b)
- autobump bio/cooltools/insulation (#3458) (4c38da3)
- autobump bio/cooltools/pileup (#3462) (7177ad2)
- autobump bio/cooltools/saddle (#3457) (7fe906d)
- autobump bio/fastp (#3464) (beb2060)
- autobump bio/gseapy/gsea (#3465) (f8cd208)
- autobump bio/merqury (#3413) (70eb542)
- autobump bio/muscle (#3466) (7c89f75)
- autobump bio/quast (#3467) (4167757)
- autobump bio/taxonkit (#3468) (bee8a4b)
- autobump bio/vep/annotate (#3470) (2332600)
- autobump bio/vg/construct (#3472) (09986e1)
- autobump bio/vg/ids (#3469) (f9889f7)
- autobump bio/vg/kmers (#3474) (555b73a)
- autobump bio/vg/merge (#3473) (61ae4e0)
- autobump bio/vg/prune (#3471) (421ae43)
- autobump bio/vg/sim (#3476) (722f872)
v5.1.0
v5.0.2
Bug Fixes
Performance Improvements
- autobump bio/bbtools (#3434) (dfa761d)
- autobump bio/bwa/mem (#3433) (943d1d4)
- autobump bio/fgbio/annotatebamwithumis (#3439) (1b32c6a)
- autobump bio/fgbio/callmolecularconsensusreads (#3441) (997e474)
- autobump bio/fgbio/collectduplexseqmetrics (#3442) (a3134e7)
- autobump bio/fgbio/filterconsensusreads (#3438) (3dfceb7)
- autobump bio/fgbio/groupreadsbyumi (#3440) (6d5bdda)
- autobump bio/fgbio/setmateinformation (#3437) (3014a61)
- autobump bio/muscle (#3443) (8e4a88b)
- autobump bio/seqkit (#3444) (c918cad)
- autobump bio/vg/construct (#3448) (5f48818)
- autobump bio/vg/ids (#3449) (1cfad9a)
- autobump bio/vg/kmers (#3446) (a7e82db)
- autobump bio/vg/merge (#3445) (179c910)
- autobump bio/vg/prune (#3450) (6be07b6)
- autobump bio/vg/sim (#3447) (fc34542)
- autobump utils/csvtk (#3435) (b90e63f)
- autobump utils/datavzrd (#3436) (1ccdea5)
- Update datavzrd wrapper (#3428) (34a454a)
- Update datavzrd wrapper (#3431) (0f16111)
v5.0.1
v5.0.0
⚠ BREAKING CHANGES
- better names for quast wrapper output files (#3377)
Bug Fixes
Performance Improvements
- autobump bio/gatk/applybqsr (#3396) (6dc7b6a)
- autobump bio/gatk/applybqsrspark (#3410) (ab28e7c)
- autobump bio/gatk/applyvqsr (#3395) (a4bfba4)
- autobump bio/gatk/baserecalibrator (#3397) (e789370)
- autobump bio/gatk/baserecalibratorspark (#3392) (e948f6b)
- autobump bio/gatk/calculatecontamination (#3402) (d88f909)
- autobump bio/gatk/callcopyratiosegments (#3399) (ca45598)
- autobump bio/gatk/cleansam (#3390) (f5e0e41)
- autobump bio/gatk/collectalleliccounts (#3405) (e03c5d6)
- autobump bio/gatk/collectreadcounts (#3385) (a8ac6e1)
- autobump bio/gatk/combinegvcfs (#3381) (b69d3e6)
- autobump bio/gatk/denoisereadcounts (#3393) (c3e6d89)
- autobump bio/gatk/depthofcoverage (#3389) (d0055c7)
- autobump bio/gatk/estimatelibrarycomplexity (#3398) (b11191d)
- autobump bio/gatk/filtermutectcalls (#3406) (bb865dd)
- autobump bio/gatk/genomicsdbimport (#3394) (50b3b5a)
- autobump bio/gatk/genotypegvcfs (#3412) (d46d029)
- autobump bio/gatk/getpileupsummaries (#3407) (03efdda)
- autobump bio/gatk/haplotypecaller (#3388) (95eddf6)
- autobump bio/gatk/intervallisttobed (#3387) (62715cb)
- autobump bio/gatk/learnreadorientationmodel (#3382) (6fcb1f2)
- autobump bio/gatk/leftalignandtrimvariants (#3408) (eacf6be)
- autobump bio/gatk/markduplicatesspark (#3400) (79de6c1)
- autobump bio/gatk/modelsegments (#3379) (ba9b042)
- autobump bio/gatk/mutect (#3401) (664f7fa)
- autobump bio/gatk/printreadsspark (#3404) (2fa4977)
- autobump bio/gatk/scatterintervalsbyns (#3386) (2ee18b9)
- autobump bio/gatk/selectvariants (#3403) (e3ebedb)
- autobump bio/gatk/splitintervals (#3378) (3df1c1a)
- autobump bio/gatk/splitncigarreads (#3409) (d202865)
- autobump bio/gatk/variantannotator (#3391) (f8d44e3)
- autobump bio/gatk/varianteval (#3384) (d2d68d9)
- autobump bio/gatk/variantfiltration (#3411) (8249d59)
- autobump bio/gatk/variantrecalibrator (#3383) (366a3df)
- autobump bio/gatk/variantstotable (#3380) (ded1d59)
- autobump bio/pbmm2/align (#3417) (ab826d6)
- autobump bio/pbmm2/index (#3416) (36c518f)
- autobump bio/pretext/graph (#3415) (b454cc0)
- autobump bio/rseqc/bam_stat (#3418) (233362c)
- autobump bio/ucsc/bedGraphToBigWig (#3419) (d0c1b18)
- autobump bio/ucsc/faToTwoBit (#3420) (5f793b4)
- autobump bio/ucsc/twoBitInfo (#3421) (dfb23f7)
- autobump bio/ucsc/twoBitToFa (#3422) (a783c85)
v4.8.0
v4.7.8
v4.7.7
v4.7.6
v4.7.5
Performance Improvements
- autobump bio/bbtools (#3308) (2dcc3de)
- autobump bio/busco (#3311) (2a30d46)
- autobump bio/bustools/count (#3309) (e1f8579)
- autobump bio/bustools/sort (#3315) (48739e0)
- autobump bio/bustools/text (#3313) (ad43eb4)
- autobump bio/bwa-mem2/mem (#3316) (aea4d0a)
- autobump bio/bwa-meme/mem (#3312) (53a0520)
- autobump bio/bwa-memx/mem (#3317) (f39d367)
- autobump bio/bwa/mem (#3319) (116476b)
- autobump bio/bwa/sampe (#3318) (544040e)
- autobump bio/bwa/samse (#3314) (1ba8f6a)
- autobump bio/bwa/samxe (#3320) (2dc3de3)
- autobump bio/delly (#3321) (7528ea7)
- autobump bio/diamond/blastp (#3323) (0930e3b)
- autobump bio/diamond/blastx (#3322) (a477015)
- autobump bio/diamond/makedb (#3324) (d8d6dfb)
- autobump bio/encode_fastq_downloader (#3325) (46ed627)
- autobump bio/gatk3/baserecalibrator (#3329) (77bca7e)
- autobump bio/gatk3/indelrealigner (#3328) (ec78b12)
- autobump bio/gatk3/printreads (#3326) (2175d97)
- autobump bio/gatk3/realignertargetcreator (#3327) (31659ec)
- autobump bio/hifiasm (#3330) (07f54f1)
- autobump bio/mapdamage2 (#3331) (16af20d)
- autobump bio/picard/addorreplacereadgroups (#3342) (c25726d)
- autobump bio/picard/bedtointervallist (#3335) (96eef37)
- autobump bio/picard/collectalignmentsummarymetrics (#3347) (8798bed)
- autobump bio/picard/collectgcbiasmetrics (#3343) (c439cc7)
- autobump bio/picard/collecthsmetrics (#3340) (e00f028)
- autobump bio/picard/collectinsertsizemetrics (#3337) (c2996cb)
- autobump bio/picard/collectmultiplemetrics (#3334) (b600fd8)
- autobump bio/picard/collectrnaseqmetrics (#3346) (8afe52f)
- autobump bio/picard/collecttargetedpcrmetrics (#3339) (1dc935a)
- autobump bio/picard/createsequencedictionary (#3338) (be16cf0)
- autobump bio/picard/markduplicates (#3333) (f9166b0)
- autobump bio/picard/mergesamfiles (#3344) (5e5c110)
- autobump bio/picard/mergevcfs (#3345) (d0e6fa5)
- autobump bio/picard/revertsam (#3332) (a552f29)
- autobump bio/picard/samtofastq (#3336) (0693f2e)
- autobump bio/picard/sortsam (#3341) (07e379c)
- autobump bio/reference/ensembl-mysql-table (#3350) (ea533ff)
- autobump bio/rseqc/infer_experiment (#3349) (eb571a2)
- autobump bio/rseqc/inner_distance (#3351) (cb16cdf)
- autobump bio/rseqc/read_distribution (#3354) (e260a36)
- autobump bio/rseqc/read_duplication (#3353) (80266c6)
- autobump bio/rseqc/read_gc (#3352) ([aaaa9f4](https://www.github.com/snakemake/snakemake-wrappers/commit/aaaa9f4bf7...