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SIB Swiss Institute of Bioinformatics

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  1. training-collection training-collection Public

    Collection of bioinformatics training materials

    Python 978 183

  2. single-cell-training single-cell-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    R 77 37

  3. intermediate-python-training intermediate-python-training Public

    Jupyter Notebook 58 25

  4. first-steps-with-python-training first-steps-with-python-training Public

    repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

    Jupyter Notebook 54 15

  5. first-steps-with-R-training first-steps-with-R-training Public

    repository of the 2-day course "First steps with R in Life Sciences" from SIB-training

    R 42 12

  6. intro-machine-learning-training intro-machine-learning-training Public

    Jupyter Notebook 36 15

Repositories

Showing 10 of 119 repositories
  • sparql-examples Public

    A set of SPARQL examples that are used in different SIB resources

    sib-swiss/sparql-examples’s past year of commit activity
  • single-cell-training Public

    SIB course on single cell transcriptomics by mostly using the Seurat pipeline

    sib-swiss/single-cell-training’s past year of commit activity
    R 77 CC-BY-4.0 37 2 0 Updated Oct 31, 2024
  • glittr Public

    A web application for finding and comparing bioinformatics training materials on GitHub and GitLab

    sib-swiss/glittr’s past year of commit activity
    PHP 35 MIT 1 3 0 Updated Oct 30, 2024
  • sib-swiss/intermediate-python-training’s past year of commit activity
    Jupyter Notebook 58 CC-BY-4.0 25 4 1 Updated Oct 30, 2024
  • queryLibrary Public

    Collection of OMOP predefined queries.

    sib-swiss/queryLibrary’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Oct 30, 2024
  • pytorch-practical-training Public

    pratrical crash course on pytorch by reproducing some published biology-related deep-learning models

    sib-swiss/pytorch-practical-training’s past year of commit activity
    Jupyter Notebook 9 CC-BY-4.0 2 0 0 Updated Oct 29, 2024
  • pyrheadb Public

    Repository for the Python package intended to facilitate access to Rhea data from Python

    sib-swiss/pyrheadb’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 29, 2024
  • sparql-editor Public

    💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.

    sib-swiss/sparql-editor’s past year of commit activity
    TypeScript 3 MIT 0 4 0 Updated Oct 28, 2024
  • containers-snakemake-training Public Forked from sib-swiss/containers-introduction-training

    Course website "Introduction to Containers and Snakemake for Reproducible Research"

    sib-swiss/containers-snakemake-training’s past year of commit activity
    Dockerfile 4 CC-BY-4.0 14 0 0 Updated Oct 28, 2024
  • sparql-llm Public

    🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries

    sib-swiss/sparql-llm’s past year of commit activity
    Jupyter Notebook 6 MIT 0 1 0 Updated Oct 28, 2024