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    119 repositories

    • sparql-examples

      Public
      A set of SPARQL examples that are used in different SIB resources
      HTML
      •
      Other
      •9•9•5•2•Updated Oct 31, 2024Oct 31, 2024

    • single-cell-training

      Public
      SIB course on single cell transcriptomics by mostly using the Seurat pipeline
      bioinformaticstutorialrna-seqcourseteachingsingle-cell
      R
      •
      Creative Commons Attribution 4.0 International
      •37•77•2•0•Updated Oct 31, 2024Oct 31, 2024

    • glittr

      Public
      A web application for finding and comparing bioinformatics training materials on GitHub and GitLab
      PHP
      •
      MIT License
      •1•35•3•0•Updated Oct 30, 2024Oct 30, 2024

    • intermediate-python-training

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •25•58•4•1•Updated Oct 30, 2024Oct 30, 2024

    • queryLibrary

      Public
      Collection of OMOP predefined queries.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • pytorch-practical-training

      Public
      pratrical crash course on pytorch by reproducing some published biology-related deep-learning models
      bioinformaticsdeep-learningpytorchtraining-materials
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •2•9•0•0•Updated Oct 29, 2024Oct 29, 2024

    • pyrheadb

      Public
      Repository for the Python package intended to facilitate access to Rhea data from Python
      Python
      •
      MIT License
      •0•1•0•0•Updated Oct 29, 2024Oct 29, 2024

    • sparql-editor

      Public
      💫 A standard web component to deploy a user-friendly SPARQL query editor for one or more endpoints. Built on the popular YASGUI editor, it provides context-aware autocomplete for classes and predicates based on the content of the endpoints.
      sparqlsparql-querysparql-query-buildersparql-editoryasgui
      TypeScript
      •
      MIT License
      •0•3•4•0•Updated Oct 28, 2024Oct 28, 2024

    • containers-snakemake-training

      Public
      Course website "Introduction to Containers and Snakemake for Reproducible Research"
      Dockerfile
      •
      Creative Commons Attribution 4.0 International
      •14•4•0•0•Updated Oct 28, 2024Oct 28, 2024

    • sparql-llm

      Public
      🦜✨ Chat system and reusable components to improve LLMs capabilities when generating SPARQL queries
      sparqlsparql-query-builderexpasyllm
      Jupyter Notebook
      •
      MIT License
      •0•6•1•0•Updated Oct 28, 2024Oct 28, 2024

    • training-collection

      Public
      Collection of bioinformatics training materials
      Python
      •
      Other
      •183•978•1•0•Updated Oct 27, 2024Oct 27, 2024

    • single-cell-python-training

      Public
      HTML
      •
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Oct 27, 2024Oct 27, 2024

    • spatial-transcriptomics-training

      Public
      R
      •
      Creative Commons Attribution 4.0 International
      •1•2•1•0•Updated Oct 27, 2024Oct 27, 2024

    • glittr-stats

      Public
      General statistics of Glittr.org. Comes with the manuscript.
      PostScript
      •0•0•0•0•Updated Oct 27, 2024Oct 27, 2024

    • immunology-in-bioinformatics-training

      Public
      HTML
      •
      Creative Commons Attribution 4.0 International
      •3•1•0•0•Updated Oct 24, 2024Oct 24, 2024

    • containers-introduction-training

      Public
      Course website "Docker and Singularity for reproducible research: getting started with containers"
      trainingdockerdockerfiletutorialcontainerssingularityteaching
      HTML
      •
      Creative Commons Attribution 4.0 International
      •14•27•1•0•Updated Oct 21, 2024Oct 21, 2024

    • epinorm

      Public
      Scripts for processing of disease outbreak records as part of the MOOD project.
      Python
      •0•2•1•0•Updated Oct 21, 2024Oct 21, 2024

    • sparql-examples-utils

      Public
      A tool to maintain and test your SPARQL examples
      qualitysparqlrdf
      Java
      •
      Other
      •9•2•13•1•Updated Oct 17, 2024Oct 17, 2024

    • kgsteward

      Public
      Knwowledge Graph Steward - Command line tool to help manage RDF store (GraphDB)
      Python
      •
      GNU General Public License v3.0
      •2•5•0•1•Updated Oct 15, 2024Oct 15, 2024

    • intermediate-machine-learning-training

      Public
      Intermediate Machine Learning course of the Swiss Institute of Bioinformatics
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•1•3•0•Updated Oct 14, 2024Oct 14, 2024

    • open-data-registry

      Public
      A registry of publicly available datasets on AWS
      Python
      •
      Apache License 2.0
      •910•0•0•0•Updated Oct 6, 2024Oct 6, 2024

    • images-training

      Public
      0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • intro-machine-learning-training

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •15•36•1•0•Updated Sep 30, 2024Sep 30, 2024

    • first-steps-with-python-training

      Public
      repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •15•54•6•0•Updated Sep 27, 2024Sep 27, 2024

    • BEAt_DKD

      Public
      R
      •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • RNAseq-introduction-training

      Public
      Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
      coursernaseq
      Creative Commons Attribution 4.0 International
      •7•13•2•0•Updated Sep 18, 2024Sep 18, 2024

    • sib-software-stack

      Public
      Scripts and documentation to deploy the SIB software stack
      Perl
      •0•1•0•0•Updated Sep 17, 2024Sep 17, 2024

    • dsSwissKnife

      Public
      R
      •1•4•0•0•Updated Sep 17, 2024Sep 17, 2024

    • unix-first-steps-training

      Public
      SIB First Steps with UNIX course
      2•6•0•0•Updated Sep 12, 2024Sep 12, 2024

    • hugo-pathogens-portal

      Public
      Hugo pathogens portal theme
      hugo-themehugopathogens
      HTML
      •
      MIT License
      •0•1•0•0•Updated Sep 11, 2024Sep 11, 2024