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Dask integration#2

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blue442 wants to merge 51 commits intopeter-i-frazier:dask_integrationpeter-i-frazier/group-testing:dask_integrationfrom UW-Madison-DSI:multiprocessing_poolUW-Madison-DSI/group-testing:multiprocessing_poolCopy head branch name to clipboard

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Commits

Commits on Jul 18, 2020

• adding reqs and new notebook

  blue442

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  6364df6

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• fix file name

  blue442

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• fix file name

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Commits on Jul 22, 2020

• wright edited

  wrightstephen

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• adding files for pilot simulations to generate figures

  blue442

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• added reqs

  blue442

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• Merge branch 'master' of https://github.com/AFIDSI/group-testing

  blue442

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• updated nominal yaml for pilot simulations

  blue442

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• specify multiple params in one config file

  blue442

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• update uw sensitivity configure, plot uw sample_path_severity_distribution

  chenyd

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• update uw fig 1 configuration

  chenyd

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• updated plotting for std y axis and changed order

  blue442

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Commits on Jul 23, 2020

• updated graphs

  blue442

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Commits on Jul 27, 2020

• added uw_pilot.sh

  blue442

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Commits on Jul 28, 2020

• implementing multiprocessing.Pool

  blue442

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Commits on Jul 30, 2020

• removed pickling of lambda functions

  blue442

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Commits on Aug 5, 2020

• running simulation for dorm room-level modeling and plotting output in notebook

  blue442

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• updated axis label

  blue442

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• more graph manipulations

  blue442

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• updates to room sims

  blue442

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Commits on Aug 7, 2020

• switched from multiprocessing.Pool to dask implementation

  blue442

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Commits on Aug 11, 2020

• killing req branch

  blue442

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• Merge branch 'requirements' into multiprocessing_pool

  blue442

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• implemented distributed computing w/ dash-chtc (need to try yet)

  blue442

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Commits on Aug 14, 2020

• add csv generating notebook

  masseyc1

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• piece together gateway + semester, interpolating

  

  Yujia Zhang

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• added daily FPR for phase 3

  

  Yujia Zhang

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• added daily FPR for phase 3

  

  Yujia Zhang

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Commits on Aug 17, 2020

• fixed import omission, updated requirements.txt

  blue442

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• updated req's

  blue442

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• exploring moving dfs definition for CHTC

  blue442

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• updated run_sensitivity.py output path for CHTC

  blue442

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• Merge branch 'multiprocessing_pool' of https://github.com/AFIDSI/group-testing into multiprocessing_pool

  blue442

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• reconfiguring dask submission

  blue442

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• Merge branch 'multiprocessing_pool' of https://github.com/AFIDSI/group-testing into multiprocessing_pool

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Commits on Aug 18, 2020

• update configure_lockdown logic in multigroup simulation & update lockdown analysis notebooks

  masseyc1

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• Merge pull request #1 from peter-i-frazier/master

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  blue442

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Commits on Aug 19, 2020

• adding materials for uw multigroup simulations

  blue442

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Commits on Aug 21, 2020

• updated uw group modeling

  blue442

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• forgot a few things...

  blue442

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Commits on Aug 23, 2020

• added age_severity_config.yaml (and a few others) to source control

  blue442

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Commits on Sep 4, 2020

• Merge branch 'multiprocessing_pool' of https://github.com/AFIDSI/group-testing into multiprocessing_pool

  blue442

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• stuffing stochastic simulation class definition into run sensitivity.py to try and alleviate import issues

  blue442

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• Merge branch 'multiprocessing_pool' of https://github.com/AFIDSI/group-testing into multiprocessing_pool

  blue442

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• added logging

  blue442

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• Merge branch 'multiprocessing_pool' of https://github.com/AFIDSI/group-testing into multiprocessing_pool

  blue442

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• refactor

  blue442

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• Merge branch 'multiprocessing_pool' of https://github.com/AFIDSI/group-testing into multiprocessing_pool

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• moving sampling functions internal to StochasticSimulation class

  blue442

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• add log directory to CHTCCluster

  blue442

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• Merge branch 'multiprocessing_pool' of https://github.com/AFIDSI/group-testing into multiprocessing_pool

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