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    49 repositories

    • nexus-app-stack-contrib

      Public
      Python
      •
      Apache License 2.0
      •0•1•1•1•Updated Jan 27, 2026Jan 27, 2026

    • smnrp

      Public
      Secure Multifunctional Nginx Reverse Proxy
      HTML
      •2•2•5•1•Updated Jan 23, 2026Jan 23, 2026

    • MAS-Clin-AI-Demo

      Public
      AI-Assisted Decision Support in Clinical Oncology Demonstration
      Jupyter Notebook
      •0•0•0•0•Updated Jan 22, 2026Jan 22, 2026

    • scAmpi_single_cell_RNA

      Public
      Code related to scRNA analysis using the scAmpi workflow
      R
      •
      GNU General Public License v3.0
      •10•27•1•2•Updated Jan 21, 2026Jan 21, 2026

    • 2023_cb_stadler_ReVSeq

      Public
      Code related analyzing respiratory viruses based on panel sequencing data
      Python
      •
      GNU General Public License v3.0
      •0•0•3•0•Updated Jan 21, 2026Jan 21, 2026

    • filesender

      Public
      This is a dockerized filesender
      PHP
      •0•0•0•0•Updated Jan 19, 2026Jan 19, 2026

    • nexus-data-management-tools

      Public
      Contains tools used for dataman
      Python
      •0•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • lego_sequencer

      Public
      A LEGO-based sequencer
      Python
      •0•1•0•26•Updated Sep 16, 2025Sep 16, 2025

    • ena_upload_ms

      Public
      Python
      •
      MIT License
      •0•2•1•0•Updated Aug 26, 2025Aug 26, 2025

    • lab_data_management

      Public
      Lab data management
      HTML
      •
      MIT License
      •0•3•13•8•Updated Aug 12, 2025Aug 12, 2025

    • nexus-se-docs

      Public
      The central docs repository for all things related to software engineering and internal SE tools
      Shell
      •
      MIT License
      •0•1•0•0•Updated Aug 11, 2025Aug 11, 2025

    • single-cell_omentum_analysis

      Public
      R
      •0•0•0•0•Updated Jun 24, 2025Jun 24, 2025

    • scROSHI

      Public
      R
      •
      Other
      •4•1•3•1•Updated Dec 12, 2024Dec 12, 2024

    • snakemake-report-plugin-custom

      Public
      A custom report plugin for snakemake workflows
      Python
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • gExcite_pipeline

      Public
      single-cell Gene and AnTibody Expression pipeline
      R
      •
      GNU General Public License v3.0
      •1•2•0•1•Updated Oct 29, 2024Oct 29, 2024

    • basic_snakemake_workflow

      Public
      A self contained snakemake workflow to test new features
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • dcc

      Public
      docker compose wrapper
      Python
      •
      MIT License
      •0•1•1•0•Updated Oct 21, 2024Oct 21, 2024

    • docker-exchange

      Public
      This is a docker image exchange repo
      0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • renku-test-project

      Public
      0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • aebc2_website

      Public
      Source code for AEBC2 website on www.aebc2.eu
      Ruby
      •0•0•0•0•Updated Aug 19, 2024Aug 19, 2024

    • civicutils

      Public
      Python package for querying, matching and downstream processing of CIViC information
      Python
      •
      GNU General Public License v3.0
      •0•1•1•1•Updated Aug 15, 2024Aug 15, 2024

    • labkey_docker

      Public
      home of docker container source files for use with LabKey
      Shell
      •
      Apache License 2.0
      •8•0•0•0•Updated Jul 11, 2024Jul 11, 2024

    • tu-pro_website

      Public
      Source code for the Tumor Profiler public website
      HTML
      •
      MIT License
      •17k•1•5•0•Updated Jul 10, 2024Jul 10, 2024

    • acint

      Public
      Python
      •0•1•0•0•Updated Jun 4, 2024Jun 4, 2024

    • quarto_example

      Public
      Mini Snakemake pipeline rendering a quarto report
      Python
      •0•1•0•0•Updated Apr 30, 2024Apr 30, 2024

    • 2024_se_loop_bmip-architecture

      Public
      Contains Architectural Documents
      0•1•0•0•Updated Mar 6, 2024Mar 6, 2024

    • openssltools

      Public
      Tools to handle certificates using openssl
      Shell
      •0•1•0•0•Updated Jan 15, 2024Jan 15, 2024

    • Workshop_RDMS_BSSE_retreat

      Public
      Dockerfile
      •0•0•0•0•Updated Nov 29, 2023Nov 29, 2023

    • vep_offline

      Public
      Python
      •0•0•0•0•Updated Apr 27, 2023Apr 27, 2023

    • ot2-workshop

      Public
      Workshop on how to program opentrons with pytnon
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Mar 29, 2023Mar 29, 2023