Skip to content

@CDCgov Centers for Disease Control and Prevention

Change the repository type filter

All

    Repositories list

    433 repositories

    • dibbs-query-connector

      Public
      A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN
      TypeScript
      •
      Creative Commons Zero v1.0 Universal
      •4•5•40•4•Updated Feb 20, 2025Feb 20, 2025

    • cfa_azure

      Public
      pythonazureazure-batchazure-container-registryazure-blob-storage
      Python
      •
      Apache License 2.0
      •5•9•6•0•Updated Feb 20, 2025Feb 20, 2025

    • dibbs-vm

      Public
      HCL
      •
      Creative Commons Zero v1.0 Universal
      •4•0•30•1•Updated Feb 20, 2025Feb 20, 2025

    • cfa-epinow2-pipeline

      Public
      R
      •
      Apache License 2.0
      •6•10•23•4•Updated Feb 20, 2025Feb 20, 2025

    • covid19-forecast-hub

      Public
      A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.
      R
      •
      Apache License 2.0
      •16•10•11•1•Updated Feb 20, 2025Feb 20, 2025

    • NEDSS-NNDSS

      Public
      Java
      •
      Apache License 2.0
      •3•0•0•2•Updated Feb 20, 2025Feb 20, 2025

    • prime-reportstream

      Public
      ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.
      fhirpublic-healthcivic-techhl7
      Kotlin
      •
      Creative Commons Zero v1.0 Universal
      •42•75•1.3k•164•Updated Feb 20, 2025Feb 20, 2025

    • cfa-viral-lineage-model

      Public
      Python
      •
      Apache License 2.0
      •2•11•17•2•Updated Feb 20, 2025Feb 20, 2025

    • phoenix

      Public
      🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens
      Python
      •
      Apache License 2.0
      •26•67•15•1•Updated Feb 20, 2025Feb 20, 2025

    • dibbs-aws

      Public template
      HCL
      •
      Creative Commons Zero v1.0 Universal
      •2•3•0•1•Updated Feb 20, 2025Feb 20, 2025

    • cdc-open-viz

      Public
      CDC OpenViz is a library of React packages for data visualization.
      reactvisualizationdatavisualization-library
      TypeScript
      •
      Apache License 2.0
      •25•39•0•5•Updated Feb 20, 2025Feb 20, 2025

    • PyRenew

      Public
      Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.
      packageepidemiologyrenewal-processinfectious-disease-models
      Python
      •
      Apache License 2.0
      •6•16•47•3•Updated Feb 19, 2025Feb 19, 2025

    • dibbs-azure

      Public
      HCL
      •
      Creative Commons Zero v1.0 Universal
      •3•0•0•1•Updated Feb 19, 2025Feb 19, 2025

    • pyrenew-hew

      Public
      Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew
      Python
      •
      Apache License 2.0
      •3•8•62•5•Updated Feb 19, 2025Feb 19, 2025

    • eMKF

      Public
      SAS
      •
      Apache License 2.0
      •3•2•0•0•Updated Feb 19, 2025Feb 19, 2025

    • terraform-aws-dibbs-ecr-viewer

      Public
      HCL
      •
      Apache License 2.0
      •3•0•1•0•Updated Feb 19, 2025Feb 19, 2025

    • Opioid_SUD_MHI_MedCodes

      Public
      Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data
      Python
      •6•6•0•0•Updated Feb 19, 2025Feb 19, 2025

    • tostadas

      Public
      🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
      pythondockermetadatabioinformaticsrna-seqpipelinenextflowgeneticsazuresequencing
      Python
      •
      Apache License 2.0
      •12•27•17•2•Updated Feb 19, 2025Feb 19, 2025

    • prime-simplereport

      Public
      SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.
      reactjsterraformgraphqlspring-boot
      Java
      •
      Creative Commons Zero v1.0 Universal
      •61•60•206•17•Updated Feb 19, 2025Feb 19, 2025

    • dibbs-ecr-viewer

      Public
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •1•2•239•7•Updated Feb 19, 2025Feb 19, 2025

    • forecasttools

      Public
      R tools for short-term forecasting
      R
      •
      Apache License 2.0
      •2•4•10•1•Updated Feb 19, 2025Feb 19, 2025

    • cfa-immunization-uptake-projection

      Public
      Python
      •
      Apache License 2.0
      •3•1•11•1•Updated Feb 19, 2025Feb 19, 2025

    • RecordLinker

      Public
      The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.
      pythonsqlalchemyfastapi
      Python
      •
      Apache License 2.0
      •2•3•20•3•Updated Feb 19, 2025Feb 19, 2025

    • DynODE

      Public
      CDC/CFA/Predict/Scenarios ODE Modeling Framework
      Python
      •
      Apache License 2.0
      •2•7•47•2•Updated Feb 19, 2025Feb 19, 2025

    • NEDSS-Modernization

      Public
      Java
      •4•20•0•8•Updated Feb 19, 2025Feb 19, 2025

    • data-exchange-upload

      Public
      The Public Health Data Operations (PHDO) Upload service provides secure ingestion, delivery, and observability of public health files from data senders to CDC program target locations via Application Programming Interfaces (APIs).
      Go
      •
      Apache License 2.0
      •6•9•42•20•Updated Feb 19, 2025Feb 19, 2025

    • data-exchange-fhir

      Public
      Enterprise Data Exchange (DEX) is a new cloud-native centralized data ingestion, validation, and observation service scoped for common data types (HL7, FHIR, CDA, XML, CSV) sent to the CDC. It helps public health stakeholders who send data to the CDC while reducing the maintenance efforts, complexity, and duplication of ingestion points to CDC.
      C#
      •
      Apache License 2.0
      •5•11•157•1•Updated Feb 19, 2025Feb 19, 2025

    • NEDSS-Infrastructure

      Public
      HCL
      •
      Apache License 2.0
      •2•2•0•0•Updated Feb 19, 2025Feb 19, 2025

    • cfa-config-generator

      Public
      Python
      •
      Apache License 2.0
      •2•1•2•1•Updated Feb 19, 2025Feb 19, 2025

    • NEDSS-Helm

      Public
      This repository is created for NEDSS Helm charts.
      Smarty
      •
      Apache License 2.0
      •4•2•0•14•Updated Feb 19, 2025Feb 19, 2025