Skip to content
@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.
README.md

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please complete this form logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

Pinned Loading

  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 20 14

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    32 38

Repositories

Showing 10 of 382 repositories
  • tostadas Public

    🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

    CDCgov/tostadas’s past year of commit activity
    Python 23 Apache-2.0 6 20 0 Updated Sep 20, 2024
  • prime-simplereport Public

    SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.

    CDCgov/prime-simplereport’s past year of commit activity
    Java 57 CC0-1.0 57 356 19 Updated Sep 20, 2024
  • NEDSS-Modernization Public
    CDCgov/NEDSS-Modernization’s past year of commit activity
    Java 17 2 0 9 Updated Sep 20, 2024
  • RecordLinker Public
    CDCgov/RecordLinker’s past year of commit activity
    Python 1 Apache-2.0 0 14 2 Updated Sep 20, 2024
  • NEDSS-DataIngestion Public

    Data Ingestion for Modernization of NEDSS Project by Enquizit

    CDCgov/NEDSS-DataIngestion’s past year of commit activity
    Java 6 Apache-2.0 2 0 7 Updated Sep 20, 2024
  • cfa-epinow2-pipeline Public
    CDCgov/cfa-epinow2-pipeline’s past year of commit activity
    R 10 Apache-2.0 2 11 3 Updated Sep 20, 2024
  • prime-reportstream Public

    ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

    CDCgov/prime-reportstream’s past year of commit activity
    Kotlin 70 CC0-1.0 39 1,325 111 Updated Sep 20, 2024
  • phoenix Public

    🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 52 Apache-2.0 19 9 2 Updated Sep 20, 2024
  • phdi-charts Public
    CDCgov/phdi-charts’s past year of commit activity
    1 CC0-1.0 0 0 4 Updated Sep 20, 2024
  • Opioid_SUD_MHI_MedCodes Public

    Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

    CDCgov/Opioid_SUD_MHI_MedCodes’s past year of commit activity
    Python 6 2 0 0 Updated Sep 19, 2024
View all repositories