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@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.
README.md

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please complete this form logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 23 32

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    38 49

Repositories

Showing 10 of 490 repositories
  • rsv-forecast-hub Public

    A repository run by the Centers for Disease Control and Prevention (CDC) to collect forecasts of weekly incident respiratory syncytial virus (RSV) hospitalizations.

    CDCgov/rsv-forecast-hub’s past year of commit activity
    3 Apache-2.0 1 8 5 Updated Sep 14, 2025
  • forecasttools-py Public

    A Python package for common pre- and post-processing operations done by CFA Predict for short term forecasting, nowcasting, and scenario modeling.

    CDCgov/forecasttools-py’s past year of commit activity
    Python 9 Apache-2.0 2 17 6 Updated Sep 14, 2025
  • hubverse-annotator Public

    Locally-hosted web application for visualization of hubverse formatted observations and model forecasts and for annotation of data and models.

    CDCgov/hubverse-annotator’s past year of commit activity
    Python 3 Apache-2.0 0 18 5 Updated Sep 14, 2025
  • prime-simplereport Public

    SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.

    CDCgov/prime-simplereport’s past year of commit activity
    Java 61 CC0-1.0 63 184 28 Updated Sep 14, 2025
  • dibbs-ecr-viewer Public

    DIBBS eCR Viewer

    CDCgov/dibbs-ecr-viewer’s past year of commit activity
    HTML 10 CC0-1.0 1 98 7 Updated Sep 14, 2025
  • phylophoenix Public

    🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.

    CDCgov/phylophoenix’s past year of commit activity
    Python 7 Apache-2.0 0 3 1 Updated Sep 14, 2025
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 84 Apache-2.0 33 13 0 Updated Sep 14, 2025
  • stimulant_opioid_algorithm_medical_codes_R Public
    CDCgov/stimulant_opioid_algorithm_medical_codes_R’s past year of commit activity
    HTML 4 Apache-2.0 3 0 0 Updated Sep 13, 2025
  • eMKF Public
    CDCgov/eMKF’s past year of commit activity
    SAS 4 Apache-2.0 4 0 0 Updated Sep 13, 2025
  • Opioid_SUD_MHI_MedCodes Public

    Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

    CDCgov/Opioid_SUD_MHI_MedCodes’s past year of commit activity
    Python 7 7 0 0 Updated Sep 13, 2025
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