Repositories list

• jazzy

  Public
  Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules.

  Python

  •

  Other

  •7•84•1•19•Updated Sep 4, 2025Sep 4, 2025

• multimodal_data_fusion

  Public
  Python

  •0•2•0•2•Updated Sep 4, 2025Sep 4, 2025

• Stochastic-gates-for-covariate-selection-in-population-pharmacokinetics-modelling-

  Public
  Code to accompany paper

  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•0•1•Updated Sep 1, 2025Sep 1, 2025

• runnable

  Public
  Runnable

  Python

  •

  Apache License 2.0

  •4•41•7•3•Updated Aug 31, 2025Aug 31, 2025

• cellatria

  Public
  An Agentic AI Framework for Ingestion and Standardization of Single-Cell RNA-seq Data Analysis

  Python

  •

  Apache License 2.0

  •4•9•0•0•Updated Aug 29, 2025Aug 29, 2025

• maraca

  Public
  R package for the creation of "maraca" plots

  R

  •

  Other

  •1•4•0•1•Updated Aug 22, 2025Aug 22, 2025

• persist-seq-galaxy-tools-setup

  Public
  Python

  •0•0•0•1•Updated Aug 8, 2025Aug 8, 2025

• multimodal-python-course

  Public
  The purpose of the code is to facilitate a comprehensive understanding of multimodal data science applications within medical domain. The code serves to support the delivery of a cutting-edge workshop designed to introduce researchers to the rapidly evolving field of multimodal data science

  Jupyter Notebook

  •

  Apache License 2.0

  •0•10•0•0•Updated Jul 28, 2025Jul 28, 2025

• peptide-tools

  Public
  Collection of tools to calculate properties of natural or synthetic peptides and proteins.

  Python

  •

  MIT License

  •7•41•0•1•Updated Jul 23, 2025Jul 23, 2025

• ToPModel

  Public
  Uses simulated time-to-event data to model efficacy by prevalence-adjusted nAb titres using a time-varying Cox model.

  SAS

  •

  Apache License 2.0

  •0•0•1•0•Updated Jul 21, 2025Jul 21, 2025

• kgem-in-drug-discovery

  Public
  Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)

  knowledge-graphdrug-discoveryknowledge-graph-embeddings+ 3target-predictionknowledge-graph-embedding-modelsdrug-discovery-knowledge-graph

  Python

  •

  Apache License 2.0

  •6•34•0•0•Updated Jul 11, 2025Jul 11, 2025

• biomedical-kg-topological-imbalance

  Public
  Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bioinformatics, 2022)

  knowledge-graphdrug-discoveryknowledge-graph-completion+ 2target-predictiondrug-discovery-knowledge-graph

  Jupyter Notebook

  •

  Apache License 2.0

  •0•18•0•0•Updated Jul 11, 2025Jul 11, 2025

• regflow

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Jun 18, 2025Jun 18, 2025

• AbFlow

  Public
  Python

  •

  Apache License 2.0

  •1•0•0•1•Updated Jun 12, 2025Jun 12, 2025

• DiffAbXL

  Public
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", formerly titled "Benchmarking Generative Models for Antibody Design".

  log-likelihoodgraph-neural-networksdiffusion-models+ 5binding-affinityin-silico-designgenerative-aiantibody-designllm-models

  Python

  •

  Apache License 2.0

  •8•83•0•0•Updated Jun 11, 2025Jun 11, 2025

• vlm

  Public
  Official implementation for "Diffusion Instruction Tuning"

  post-trainingmultimodal-alignmentsupervised-finetuning+ 2vision-language-modelmultimodal-large-language-models

  Python

  •3•25•2•0•Updated Jun 10, 2025Jun 10, 2025

• agpower

  Public
  agpower: Recurrent event analysis planning using the Andersen-Gill model in R

  R

  •

  Apache License 2.0

  •0•1•0•0•Updated Jun 4, 2025Jun 4, 2025

• rshiny_cuimet

  Public
  CUI-MET: Clinical Utility Index Dose Optimization Approach for Multiple-Dose, Multiple-Outcome Randomized Trial Designs

  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 3, 2025Jun 3, 2025

• r-package-umet

  Public
  R

  •0•0•0•0•Updated Jun 2, 2025Jun 2, 2025

• ISpyMSI

  Public
  Python

  •

  Apache License 2.0

  •0•1•0•1•Updated May 30, 2025May 30, 2025

• awesome-drug-discovery-knowledge-graphs

  Public
  A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets relating to drug discovery: a knowledge graph perspective" (Briefings in Bioinformatics, 2022)

  knowledge-graphdrug-discoveryawesome-list+ 1drug-discovery-knowledge-graph

  Apache License 2.0

  •26•236•0•0•Updated May 26, 2025May 26, 2025

• PerfCam

  Public
  PoC Code for PerfCam: Digital Twinning for Production Lines Using 3D Gaussian Splatting and Vision Models

  computer-visionyoloobject-detection+ 43d-reconstructiondigital-twinvision-modelsgaussian-splatting

  Jupyter Notebook

  •

  Apache License 2.0

  •2•9•0•0•Updated May 13, 2025May 13, 2025

• PerfCam-Dataset

  Public
  Dataset for PerfCam: Digital Twinning for Production Lines Using 3D Gaussian Splatting and Vision Models

  computer-visionyoloobject-detection+ 43d-reconstructiondigital-twinvision-modelsgaussian-splatting

  Python

  •

  Apache License 2.0

  •0•4•0•0•Updated May 2, 2025May 2, 2025

• ppm-ad-neuroscience

  Public
  Contains script for AI-guided patient stratification manuscript in collaboration with University of Cambridge

  HTML

  •

  Apache License 2.0

  •1•1•1•0•Updated Apr 22, 2025Apr 22, 2025

• LLE_Digital_Tool

  Public
  Repository to hold code and data for manuscript: "A Digital Tool for Liquid-Liquid Extraction Process Design"

  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•1•0•Updated Apr 22, 2025Apr 22, 2025

• PatchExtractor

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• KAZU

  Public
  Fast, world class biomedical NER

  biomedical-text-miningnlpnatural-language-processing

  Python

  •

  Apache License 2.0

  •9•87•27•9•Updated Mar 4, 2025Mar 4, 2025

• napari-wsi

  Public
  A plugin to read whole slide images within napari.

  Python

  •

  Apache License 2.0

  •2•21•1•0•Updated Feb 26, 2025Feb 26, 2025

• HandyCT

  Public
  R

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• NurtureSubmission

  Public
  Python

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025