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26 Open 13 Closed
26 Open 13 Closed
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Issues list

Sort out mypy errors and overrides
#72 opened Sep 18, 2024 by paluchasz
@paluchasz
Protocols should use Ellipsis (...)
#70 opened Sep 11, 2024 by paluchasz
mention_confidence not available for some namespace type
#55 opened Jul 12, 2024 by wonjininfo
typing-extension and pydantic version requirements
#54 opened Jul 12, 2024 by wonjininfo
Add PFAM clans to ontology list
#43 opened Jun 10, 2024 by RichJackson
check tests don’t clog up DB
#41 opened Jun 10, 2024 by RichJackson
Consider using a delta when returning search hits
#40 opened Jun 10, 2024 by RichJackson
improve Xref mappings by using. embedded xref information from ontologies
#39 opened Jun 10, 2024 by RichJackson
stanza 1.6.0 failing IT on linux
#38 opened Jun 10, 2024 by RichJackson
turn off hydra output file logging?
#37 opened Jun 10, 2024 by RichJackson
Transformer matches can be too conservative
#36 opened Jun 10, 2024 by RichJackson
Better merging of 'staggered overlapping entities
#35 opened Jun 10, 2024 by RichJackson
Check hash=False vs. compare=False for all dataclasses
#34 opened Jun 10, 2024 by RichJackson
Delete legacy layer in TinyBern2 model
#33 opened Jun 10, 2024 by RichJackson
change SynonymDb.get to use .get rather than index
#32 opened Jun 10, 2024 by RichJackson
find a solution for mapping_types in SynonymTerm
#31 opened Jun 10, 2024 by RichJackson
improve Tinybern2 tagging consistency with majority voting
#30 opened Jun 10, 2024 by RichJackson
call classify_symbolic in Entity.__post_init__ by splitting up normalize method
#29 opened Jun 10, 2024 by RichJackson
explore multi term matching in TermNormIsSubString
#28 opened Jun 10, 2024 by RichJackson
Use Hydra for configuring the model pack build config .json file
#27 opened Jun 10, 2024 by RichJackson
Smart span matching
#26 opened Jun 10, 2024 by RichJackson
Better Exception handling
#25 opened Jun 10, 2024 by RichJackson
Issues with AbbreviationFinderStep deleting entities
#21 opened Mar 1, 2024 by simoond
22
Extending Kazu
#20 opened Feb 2, 2024 by raylite
8
Relation extraction?
#13 opened Nov 3, 2023 by svlandeg
1
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