continuous integration

.github/workflows/ci.yaml

@@ -51,5 +51,11 @@ jobs:
         run: conda info
       - name: Conda list
         run: conda list
+      - name: install julia packages
+        run: |
+          julia install_julia_packages.jl
+      - name: install bitinformation_pipeline
+        run: |
+          pip install .
       - name: Run tests
-        run: pytest # -n 4 --durations=20
+        run: pytest

bitinformation_pipeline/bitinformation_pipeline.py

@@ -6,7 +6,7 @@
 import xarray as xr
 from julia.api import Julia
 
-jl = Julia(compiled_modules=False)
+jl = Julia(compiled_modules=False, debug=True)
 from julia import Main  # noqa: E402
 
 path_to_julia_functions = os.path.join(

environment.yml

@@ -2,7 +2,7 @@ name: bitinfo
 channels:
   - conda-forge
 dependencies:
-  - python
+  - python=3.8.8
   - julia
   - pyjulia
   - matplotlib-base

install_julia_packages.jl

@@ -0,0 +1,8 @@
+import Pkg
+Pkg.add("PyCall")
+Pkg.add("PyPlot")
+Pkg.add("Statistics")
+Pkg.add("StatsBase")
+Pkg.add("NetCDF")
+Pkg.add("JSON3")
+Pkg.add("BitInformation")

tests/test_bitinformation_pipeline.py

@@ -11,4 +11,5 @@ def test_get_bitinformation():
     """Test bm.get_bitinformation."""
     ds = xr.tutorial.load_dataset("rasm")
     bitinfo = bp.get_bitinformation(ds, dim=1)
+    print(bitinfo)
     assert bitinfo