Skip to content

Issues: nextstrain/avian-flu

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

11 Open 21 Closed
11 Open 21 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Use genbank_mapping.tsv to join GenBank and SRA/Andersen lab records
#97 opened Oct 16, 2024 by joverlee521
Extend oropouche segment-matching approach to avian flu enhancement New feature or request
#92 opened Oct 2, 2024 by genehack
@jameshadfield
1
NCBI ingest: reduce manual curation of hosts enhancement New feature or request
#91 opened Aug 29, 2024 by joverlee521
1
Add Snakefile.clades rules into main snakefile enhancement New feature or request
#84 opened Aug 16, 2024 by jameshadfield
Explore NCBI Assembly records to link segment sequences
#82 opened Aug 2, 2024 by joverlee521
Adding USDA genotype and lineage enhancement New feature or request
#80 opened Jul 26, 2024 by jameshadfield
Snakemake improvements
#70 opened Jul 9, 2024 by jameshadfield
2
ingest/ncbi: use new augur curate commands
#67 opened Jul 3, 2024 by joverlee521
3 tasks
ingest: Run Nextclade as part of ingest
#44 opened May 31, 2024 by joverlee521
1
@joverlee521
2
Annotate H5 clades through a node data JSON file instead of modifying metadata enhancement New feature or request
#25 opened May 2, 2024 by huddlej
Adopt Nextstrain's Snakemake style guide
#18 opened Apr 25, 2024 by victorlin
ProTip! Mix and match filters to narrow down what you’re looking for.