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Curate titlecase #1197

Merged
merged 5 commits into from
Jul 28, 2023
Merged

Curate titlecase #1197

merged 5 commits into from
Jul 28, 2023

Commits on Jul 28, 2023

  1. [titlecase] Adds augur curate titlecase sub-command 

    Adds a new sub-command `augur curate titlecase` based on the transform-string-fields
script in the monkeypox repo. The `augur curate normalize` sub-command
has already been added based on the same script (#1039).

Overall this is part of filling in the gaps in the augur curate suite of commands (#860),
specifically addressing issue (#999), and is a follow-up to #1039.

`augur curate titlecase` would transform the values of a given metadata field to titlecase.
This is useful for normalizing the values of a string that may contain inconsistent
capitalization such as "North America" and "north america".

This commit also adds a test for the new sub-command and updates the documentation.
For testing an upper case to lower case circumflex'd o character conversion, had to use
the escaped unicode character

Co-authored-by: Jover Lee <[email protected]>
    @j23414 @joverlee521
    j23414 and joverlee521 committed Jul 28, 2023
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  2. [titlecase] Tests more edge cases 

    Tests a few more valid (and invalid) edge cases for augur curate titlecase.

1. Skip processing fields that have a null value
2. Throw an error on fields that have a bare-int (or non-string) value
3. Skip processing fields that do not exist in the data
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    j23414 committed Jul 28, 2023
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  3. [titlecase] Better error message when on non-string values

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    j23414 committed Jul 28, 2023
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  4. [titlecase] Add compatibility with error_all 

    Co-authored-by: Jover Lee <[email protected]>
    @j23414 @joverlee521
    j23414 and joverlee521 committed Jul 28, 2023
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  5. Update changelog

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    j23414 committed Jul 28, 2023
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