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Issues list

CLI help text can't contain rST section headings documentation Improvements or additions to documentation
#1657 opened Oct 23, 2024 by victorlin
Gff3 file: differences between nextclade datasets and augur ancestral documentation Improvements or additions to documentation
#1655 opened Oct 21, 2024 by anna-parker
2
Improve help text of CLI options that use extend and ExtendOverwriteDefault actions documentation Improvements or additions to documentation
#1654 opened Oct 17, 2024 by joverlee521
3
Update help docs for augur curate format-dates documentation Improvements or additions to documentation
#1651 opened Oct 16, 2024 by anna-parker
1
@joverlee521
7
curate apply-geolocation-rules: Allow rule overrides enhancement New feature or request
#1648 opened Oct 3, 2024 by joverlee521
Add examples for weighted sampling with multiple columns including month/week documentation Improvements or additions to documentation
#1645 opened Sep 25, 2024 by victorlin
Also accept "region" as synonym of "source" for gb files? enhancement New feature or request
#1643 opened Sep 25, 2024 by corneliusroemer
1
Improve rendering of CLI documentation
#1642 opened Sep 24, 2024 by victorlin
7 tasks
CI/release: Run tests on build artifacts
#1638 opened Sep 23, 2024 by victorlin
Improve help text of CLI options
#1630 opened Sep 13, 2024 by victorlin
2 tasks
3
augur merge is slow to read in metadata enhancement New feature or request
#1628 opened Sep 10, 2024 by tsibley
2 tasks
Release: changelog can be out-of-sync bug Something isn't working
#1620 opened Sep 3, 2024 by victorlin
4
merge: Import metadata files concurrently? enhancement New feature or request
#1617 opened Sep 3, 2024 by tsibley
Align fractional sequences per group conversion methods proposal Proposals that warrant further discussion
#1614 opened Aug 29, 2024 by victorlin
@victorlin
Revise docs for v25 features to add versionadded directives
#1612 opened Aug 28, 2024 by genehack
Legacy editable installs are deprecated bug Something isn't working
#1611 opened Aug 28, 2024 by genehack
filter: Prefer "output sequences" over "output"? proposal Proposals that warrant further discussion
#1607 opened Aug 27, 2024 by victorlin
1
2
augur ancestral - IndexError when using wrong (shorter) reference bug Something isn't working
#1600 opened Aug 27, 2024 by ammaraziz
Use identical help text for shared options documentation Improvements or additions to documentation
#1597 opened Aug 21, 2024 by victorlin
filter: Make under-sampling more apparent enhancement New feature or request
#1590 opened Aug 20, 2024 by victorlin
@victorlin
augur curate format-host enhancement New feature or request
#1586 opened Aug 20, 2024 by joverlee521
1
CLI docs have incorrect default values for options using store_false action bug Something isn't working documentation Improvements or additions to documentation
#1585 opened Aug 20, 2024 by victorlin
2
Missing trait literals are converted to lower case in augur export stderr output bug Something isn't working
#1584 opened Aug 17, 2024 by corneliusroemer
1
Update language around snakemake install documentation Improvements or additions to documentation
#1582 opened Aug 16, 2024 by genehack
Uncaught error when root not in tree. bug Something isn't working
#1580 opened Aug 15, 2024 by vanessazubach
9
ProTip! Exclude everything labeled bug with -label:bug.