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Feat/parse nextclade annotation #1559

Feat/parse nextclade annotation

Feat/parse nextclade annotation #1559

Triggered via pull request August 1, 2023 13:06
Status Failure
Total duration 9m 40s
Artifacts

ci.yaml

on: pull_request
Matrix: pytest-cram
build-docs  /  build-conda
0s
build-docs / build-conda
build-docs  /  build-pip
2m 14s
build-docs / build-pip
Matrix: pathogen-ci
codecov
0s
codecov
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Annotations

37 errors and 23 warnings
test-pathogen-repo-ci (monkeypox)
Process completed with exit code 127.
test-pathogen-repo-ci (lassa)
Process completed with exit code 127.
test-pathogen-repo-ci (seasonal-flu)
Process completed with exit code 127.
test-pathogen-repo-ci (avian-flu)
Process completed with exit code 127.
test-pathogen-repo-ci (ebola)
Process completed with exit code 127.
test-pathogen-repo-ci (mumps)
Process completed with exit code 127.
test-pathogen-repo-ci (ncov)
Process completed with exit code 127.
test-pathogen-repo-ci (zika)
Process completed with exit code 127.
test (python=3.7 biopython=1.73)
Process completed with exit code 2.
test (python=3.8 biopython=1.79)
The job was canceled because "_3_7_1_73" failed.
test (python=3.8 biopython=1.79)
The operation was canceled.
test (python=3.11 biopython=1.80)
The job was canceled because "_3_7_1_73" failed.
test (python=3.11 biopython=1.80)
The operation was canceled.
test (python=3.9 biopython=latest)
The job was canceled because "_3_7_1_73" failed.
test (python=3.9 biopython=latest)
The operation was canceled.
test (python=3.7 biopython=1.79)
The job was canceled because "_3_7_1_73" failed.
test (python=3.7 biopython=1.79)
The operation was canceled.
test (python=3.11 biopython=latest)
The job was canceled because "_3_7_1_73" failed.
test (python=3.11 biopython=latest)
The operation was canceled.
test (python=3.8 biopython=1.76)
The job was canceled because "_3_7_1_73" failed.
test (python=3.10 biopython=latest)
The job was canceled because "_3_7_1_73" failed.
test (python=3.8 biopython=1.76)
The operation was canceled.
test (python=3.10 biopython=latest)
The operation was canceled.
test (python=3.8 biopython=latest)
The job was canceled because "_3_7_1_73" failed.
test (python=3.8 biopython=latest)
The operation was canceled.
test (python=3.7 biopython=latest)
The job was canceled because "_3_7_1_73" failed.
test (python=3.7 biopython=latest)
The operation was canceled.
test (python=3.7 biopython=1.76)
The job was canceled because "_3_7_1_73" failed.
test (python=3.7 biopython=1.76)
The operation was canceled.
test (python=3.9 biopython=1.79)
The job was canceled because "_3_7_1_73" failed.
test (python=3.9 biopython=1.79)
The operation was canceled.
test (python=3.8 biopython=1.80)
The job was canceled because "_3_7_1_73" failed.
test (python=3.8 biopython=1.80)
The operation was canceled.
test (python=3.9 biopython=1.80)
The job was canceled because "_3_7_1_73" failed.
test (python=3.9 biopython=1.80)
The operation was canceled.
test (python=3.10 biopython=1.80)
The job was canceled because "_3_7_1_73" failed.
test (python=3.10 biopython=1.80)
The operation was canceled.
test-pathogen-repo-ci (monkeypox)
No files were found with the provided path: auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci (lassa)
No files were found with the provided path: auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci (seasonal-flu)
No files were found with the provided path: auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci (avian-flu)
No files were found with the provided path: auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci (ebola)
No files were found with the provided path: auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci (mumps)
No files were found with the provided path: auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci (ncov)
No files were found with the provided path: auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test-pathogen-repo-ci (zika)
No files were found with the provided path: auspice/ results/ benchmarks/ logs/ .snakemake/log/. No artifacts will be uploaded.
test (python=3.7 biopython=1.73)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.8 biopython=1.79)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.11 biopython=1.80)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.9 biopython=latest)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.7 biopython=1.79)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.11 biopython=latest)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.8 biopython=1.76)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.10 biopython=latest)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.8 biopython=latest)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.7 biopython=latest)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.7 biopython=1.76)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.9 biopython=1.79)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.8 biopython=1.80)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.9 biopython=1.80)
Mamba support is still experimental and can result in differently solved environments!
test (python=3.10 biopython=1.80)
Mamba support is still experimental and can result in differently solved environments!