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parse: Prefer strain over name as sequence ID field #2838

parse: Prefer strain over name as sequence ID field

parse: Prefer strain over name as sequence ID field #2838

Triggered via pull request September 10, 2024 22:14
Status Failure
Total duration 11m 45s
Artifacts 13

ci.yaml

on: pull_request
Matrix: pytest-cram
Matrix: pathogen-repo-ci-v0
Matrix: pathogen-repo-ci
codecov
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15 errors and 3 warnings
test (python=3.8 biopython=1.80)
Process completed with exit code 1.
test (python=3.9 biopython=latest)
The job was canceled because "_3_8_1_80" failed.
test (python=3.9 biopython=latest)
The operation was canceled.
test (python=3.9 biopython=1.80)
The job was canceled because "_3_8_1_80" failed.
test (python=3.9 biopython=1.80)
The operation was canceled.
test (python=3.11 biopython=latest)
The job was canceled because "_3_8_1_80" failed.
test (python=3.11 biopython=latest)
The operation was canceled.
test (python=3.10 biopython=1.80)
The job was canceled because "_3_8_1_80" failed.
test (python=3.10 biopython=1.80)
The operation was canceled.
test (python=3.10 biopython=latest)
The job was canceled because "_3_8_1_80" failed.
test (python=3.10 biopython=latest)
The operation was canceled.
test (python=3.11 biopython=1.80)
The job was canceled because "_3_8_1_80" failed.
test (python=3.11 biopython=1.80)
The operation was canceled.
test (python=3.8 biopython=latest)
The job was canceled because "_3_8_1_80" failed.
test (python=3.8 biopython=latest)
The operation was canceled.
pyright
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
check-docs
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
mypy
The `python-version` input is not set. The version of Python currently in `PATH` will be used.

Artifacts

Produced during runtime
Name Size
output-avian-flu
93.4 KB
output-dengue
1.32 MB
output-ebola
111 KB
output-lassa
322 KB
output-measles
3.85 MB
output-mpox
12.7 MB
output-mumps
339 KB
output-ncov
506 KB
output-rsv
9.42 MB
output-seasonal-cov
1.46 MB
output-seasonal-flu
49.2 KB
output-tb
5.03 MB
output-zika
741 KB