Deployed 56514b6 with MkDocs version: 1.6.0

monarch-initiative · May 12, 2024 · d483ffc · d483ffc
commit d483ffc
Show file tree

Hide file tree

Showing 179 changed files with 182,171 additions and 0 deletions.
diff --git a/.nojekyll b/.nojekyll
diff --git a/404.html b/404.html
diff --git a/api/creation/age_column_mapper/index.html b/api/creation/age_column_mapper/index.html
diff --git a/api/creation/case_template_encoder/index.html b/api/creation/case_template_encoder/index.html
diff --git a/api/creation/citation/index.html b/api/creation/citation/index.html
diff --git a/api/creation/cohort_encoder/index.html b/api/creation/cohort_encoder/index.html
diff --git a/api/creation/column_mapper/index.html b/api/creation/column_mapper/index.html
diff --git a/api/creation/constant_column_mapper/index.html b/api/creation/constant_column_mapper/index.html
diff --git a/api/creation/create_template/index.html b/api/creation/create_template/index.html
diff --git a/api/creation/disease/index.html b/api/creation/disease/index.html
diff --git a/api/creation/disease_id_column_mapper/index.html b/api/creation/disease_id_column_mapper/index.html
diff --git a/api/creation/hgvs_variant/index.html b/api/creation/hgvs_variant/index.html
diff --git a/api/creation/hp_term/index.html b/api/creation/hp_term/index.html
diff --git a/api/creation/hpo_cr/index.html b/api/creation/hpo_cr/index.html
diff --git a/api/creation/hpo_exact_cr/index.html b/api/creation/hpo_exact_cr/index.html
diff --git a/api/creation/hpo_parser/index.html b/api/creation/hpo_parser/index.html
diff --git a/api/creation/index.html b/api/creation/index.html
diff --git a/api/creation/individual/index.html b/api/creation/individual/index.html
diff --git a/api/creation/iso_age/index.html b/api/creation/iso_age/index.html
diff --git a/api/creation/metadata/index.html b/api/creation/metadata/index.html
diff --git a/api/creation/option_column_mapper/index.html b/api/creation/option_column_mapper/index.html
diff --git a/api/creation/sex_column_mapper/index.html b/api/creation/sex_column_mapper/index.html
diff --git a/api/creation/simple_column_mapper/index.html b/api/creation/simple_column_mapper/index.html
diff --git a/api/creation/simple_column_mapper_generator/index.html b/api/creation/simple_column_mapper_generator/index.html
diff --git a/api/creation/structural_variant/index.html b/api/creation/structural_variant/index.html
diff --git a/api/creation/thresholded_column_mapper/index.html b/api/creation/thresholded_column_mapper/index.html
diff --git a/api/creation/thresholder/index.html b/api/creation/thresholder/index.html
diff --git a/api/creation/variant/index.html b/api/creation/variant/index.html
diff --git a/api/creation/variant_column_mapper/index.html b/api/creation/variant_column_mapper/index.html
diff --git a/api/creation/variant_manager/index.html b/api/creation/variant_manager/index.html
diff --git a/api/creation/variant_validator/index.html b/api/creation/variant_validator/index.html
diff --git a/api/overview/index.html b/api/overview/index.html
diff --git a/api/validation/cohort_validator/index.html b/api/validation/cohort_validator/index.html
diff --git a/api/validation/content_validator/index.html b/api/validation/content_validator/index.html
diff --git a/api/validation/index.html b/api/validation/index.html
diff --git a/api/validation/ontology_qc/index.html b/api/validation/ontology_qc/index.html
diff --git a/api/validation/validation_result/index.html b/api/validation/validation_result/index.html
diff --git a/api/visualization/detailed_suppl_table/index.html b/api/visualization/detailed_suppl_table/index.html
diff --git a/api/visualization/hpoa_table_creator/index.html b/api/visualization/hpoa_table_creator/index.html
diff --git a/api/visualization/index.html b/api/visualization/index.html
diff --git a/api/visualization/onset_calculator/index.html b/api/visualization/onset_calculator/index.html
diff --git a/api/visualization/phenopacket_ingestor/index.html b/api/visualization/phenopacket_ingestor/index.html
diff --git a/api/visualization/phenopacket_table/index.html b/api/visualization/phenopacket_table/index.html
diff --git a/api/visualization/qc_visualizer/index.html b/api/visualization/qc_visualizer/index.html
diff --git a/assets/_mkdocstrings.css b/assets/_mkdocstrings.css
@@ -0,0 +1,119 @@
+
+/* Avoid breaking parameter names, etc. in table cells. */
+.doc-contents td code {
+  word-break: normal !important;
+}
+
+/* No line break before first paragraph of descriptions. */
+.doc-md-description,
+.doc-md-description>p:first-child {
+  display: inline;
+}
+
+/* Max width for docstring sections tables. */
+.doc .md-typeset__table,
+.doc .md-typeset__table table {
+  display: table !important;
+  width: 100%;
+}
+
+.doc .md-typeset__table tr {
+  display: table-row;
+}
+
+/* Defaults in Spacy table style. */
+.doc-param-default {
+  float: right;
+}
+
+/* Backward-compatibility: docstring section titles in bold. */
+.doc-section-title {
+  font-weight: bold;
+}
+
+/* Symbols in Navigation and ToC. */
+:root,
+[data-md-color-scheme="default"] {
+  --doc-symbol-attribute-fg-color: #953800;
+  --doc-symbol-function-fg-color: #8250df;
+  --doc-symbol-method-fg-color: #8250df;
+  --doc-symbol-class-fg-color: #0550ae;
+  --doc-symbol-module-fg-color: #5cad0f;
+
+  --doc-symbol-attribute-bg-color: #9538001a;
+  --doc-symbol-function-bg-color: #8250df1a;
+  --doc-symbol-method-bg-color: #8250df1a;
+  --doc-symbol-class-bg-color: #0550ae1a;
+  --doc-symbol-module-bg-color: #5cad0f1a;
+}
+
+[data-md-color-scheme="slate"] {
+  --doc-symbol-attribute-fg-color: #ffa657;
+  --doc-symbol-function-fg-color: #d2a8ff;
+  --doc-symbol-method-fg-color: #d2a8ff;
+  --doc-symbol-class-fg-color: #79c0ff;
+  --doc-symbol-module-fg-color: #baff79;
+
+  --doc-symbol-attribute-bg-color: #ffa6571a;
+  --doc-symbol-function-bg-color: #d2a8ff1a;
+  --doc-symbol-method-bg-color: #d2a8ff1a;
+  --doc-symbol-class-bg-color: #79c0ff1a;
+  --doc-symbol-module-bg-color: #baff791a;
+}
+
+code.doc-symbol {
+  border-radius: .1rem;
+  font-size: .85em;
+  padding: 0 .3em;
+  font-weight: bold;
+}
+
+code.doc-symbol-attribute {
+  color: var(--doc-symbol-attribute-fg-color);
+  background-color: var(--doc-symbol-attribute-bg-color);
+}
+
+code.doc-symbol-attribute::after {
+  content: "attr";
+}
+
+code.doc-symbol-function {
+  color: var(--doc-symbol-function-fg-color);
+  background-color: var(--doc-symbol-function-bg-color);
+}
+
+code.doc-symbol-function::after {
+  content: "func";
+}
+
+code.doc-symbol-method {
+  color: var(--doc-symbol-method-fg-color);
+  background-color: var(--doc-symbol-method-bg-color);
+}
+
+code.doc-symbol-method::after {
+  content: "meth";
+}
+
+code.doc-symbol-class {
+  color: var(--doc-symbol-class-fg-color);
+  background-color: var(--doc-symbol-class-bg-color);
+}
+
+code.doc-symbol-class::after {
+  content: "class";
+}
+
+code.doc-symbol-module {
+  color: var(--doc-symbol-module-fg-color);
+  background-color: var(--doc-symbol-module-bg-color);
+}
+
+code.doc-symbol-module::after {
+  content: "mod";
+}
+
+.doc-signature .autorefs {
+  color: inherit;
+  border-bottom: 1px dotted currentcolor;
+}
diff --git a/assets/images/favicon.png b/assets/images/favicon.png
diff --git a/assets/images/social/api/creation.png b/assets/images/social/api/creation.png
diff --git a/assets/images/social/api/creation/age_column_mapper.png b/assets/images/social/api/creation/age_column_mapper.png
diff --git a/assets/images/social/api/creation/case_template_encoder.png b/assets/images/social/api/creation/case_template_encoder.png
diff --git a/assets/images/social/api/creation/citation.png b/assets/images/social/api/creation/citation.png
diff --git a/assets/images/social/api/creation/cohort_encoder.png b/assets/images/social/api/creation/cohort_encoder.png
diff --git a/assets/images/social/api/creation/column_mapper.png b/assets/images/social/api/creation/column_mapper.png
diff --git a/assets/images/social/api/creation/constant_column_mapper.png b/assets/images/social/api/creation/constant_column_mapper.png
diff --git a/assets/images/social/api/creation/create_template.png b/assets/images/social/api/creation/create_template.png
diff --git a/assets/images/social/api/creation/disease.png b/assets/images/social/api/creation/disease.png
diff --git a/assets/images/social/api/creation/disease_id_column_mapper.png b/assets/images/social/api/creation/disease_id_column_mapper.png
diff --git a/assets/images/social/api/creation/hgvs_variant.png b/assets/images/social/api/creation/hgvs_variant.png
diff --git a/assets/images/social/api/creation/hp_term.png b/assets/images/social/api/creation/hp_term.png
diff --git a/assets/images/social/api/creation/hpo_cr.png b/assets/images/social/api/creation/hpo_cr.png
diff --git a/assets/images/social/api/creation/hpo_exact_cr.png b/assets/images/social/api/creation/hpo_exact_cr.png
diff --git a/assets/images/social/api/creation/hpo_parser.png b/assets/images/social/api/creation/hpo_parser.png
diff --git a/assets/images/social/api/creation/individual.png b/assets/images/social/api/creation/individual.png
diff --git a/assets/images/social/api/creation/iso_age.png b/assets/images/social/api/creation/iso_age.png
diff --git a/assets/images/social/api/creation/metadata.png b/assets/images/social/api/creation/metadata.png
diff --git a/assets/images/social/api/creation/option_column_mapper.png b/assets/images/social/api/creation/option_column_mapper.png
diff --git a/assets/images/social/api/creation/sex_column_mapper.png b/assets/images/social/api/creation/sex_column_mapper.png
diff --git a/assets/images/social/api/creation/simple_column_mapper.png b/assets/images/social/api/creation/simple_column_mapper.png
diff --git a/assets/images/social/api/creation/simple_column_mapper_generator.png b/assets/images/social/api/creation/simple_column_mapper_generator.png
diff --git a/assets/images/social/api/creation/structural_variant.png b/assets/images/social/api/creation/structural_variant.png
diff --git a/assets/images/social/api/creation/thresholded_column_mapper.png b/assets/images/social/api/creation/thresholded_column_mapper.png
diff --git a/assets/images/social/api/creation/thresholder.png b/assets/images/social/api/creation/thresholder.png
diff --git a/assets/images/social/api/creation/variant.png b/assets/images/social/api/creation/variant.png
diff --git a/assets/images/social/api/creation/variant_column_mapper.png b/assets/images/social/api/creation/variant_column_mapper.png
diff --git a/assets/images/social/api/creation/variant_manager.png b/assets/images/social/api/creation/variant_manager.png
diff --git a/assets/images/social/api/creation/variant_validator.png b/assets/images/social/api/creation/variant_validator.png
diff --git a/assets/images/social/api/overview.png b/assets/images/social/api/overview.png
diff --git a/assets/images/social/api/validation.png b/assets/images/social/api/validation.png
diff --git a/assets/images/social/api/validation/cohort_validator.png b/assets/images/social/api/validation/cohort_validator.png
diff --git a/assets/images/social/api/validation/content_validator.png b/assets/images/social/api/validation/content_validator.png
diff --git a/assets/images/social/api/validation/ontology_qc.png b/assets/images/social/api/validation/ontology_qc.png
diff --git a/assets/images/social/api/validation/validation_result.png b/assets/images/social/api/validation/validation_result.png
diff --git a/assets/images/social/api/visualization.png b/assets/images/social/api/visualization.png
diff --git a/assets/images/social/api/visualization/detailed_suppl_table.png b/assets/images/social/api/visualization/detailed_suppl_table.png
diff --git a/assets/images/social/api/visualization/hpoa_table_creator.png b/assets/images/social/api/visualization/hpoa_table_creator.png
diff --git a/assets/images/social/api/visualization/onset_calculator.png b/assets/images/social/api/visualization/onset_calculator.png
diff --git a/assets/images/social/api/visualization/phenopacket_ingestor.png b/assets/images/social/api/visualization/phenopacket_ingestor.png
diff --git a/assets/images/social/api/visualization/phenopacket_table.png b/assets/images/social/api/visualization/phenopacket_table.png
diff --git a/assets/images/social/api/visualization/qc_visualizer.png b/assets/images/social/api/visualization/qc_visualizer.png
diff --git a/assets/images/social/developers/developers.png b/assets/images/social/developers/developers.png
diff --git a/assets/images/social/developers/hpoa_editing.png b/assets/images/social/developers/hpoa_editing.png
diff --git a/assets/images/social/developers/installation.png b/assets/images/social/developers/installation.png
diff --git a/assets/images/social/developers/internal.png b/assets/images/social/developers/internal.png
diff --git a/assets/images/social/index.png b/assets/images/social/index.png
diff --git a/assets/images/social/tabular/choosing_column_mapper.png b/assets/images/social/tabular/choosing_column_mapper.png
diff --git a/assets/images/social/tabular/cohort_encoder.png b/assets/images/social/tabular/cohort_encoder.png
diff --git a/assets/images/social/tabular/constant_column_mapper.png b/assets/images/social/tabular/constant_column_mapper.png
diff --git a/assets/images/social/tabular/jupyter.png b/assets/images/social/tabular/jupyter.png
diff --git a/assets/images/social/tabular/option_column_mapper.png b/assets/images/social/tabular/option_column_mapper.png
diff --git a/assets/images/social/tabular/overview.png b/assets/images/social/tabular/overview.png
diff --git a/assets/images/social/tabular/simple_column_mapper.png b/assets/images/social/tabular/simple_column_mapper.png
diff --git a/assets/images/social/tabular/threshold_column_mapper.png b/assets/images/social/tabular/threshold_column_mapper.png
diff --git a/assets/images/social/tabular/validation.png b/assets/images/social/tabular/validation.png
diff --git a/assets/images/social/tabular/variant_column_mapper.png b/assets/images/social/tabular/variant_column_mapper.png
diff --git a/assets/images/social/tabular/visualization.png b/assets/images/social/tabular/visualization.png
diff --git a/assets/images/social/user-guide/excel.png b/assets/images/social/user-guide/excel.png
diff --git a/assets/images/social/user-guide/python_notebook.png b/assets/images/social/user-guide/python_notebook.png
diff --git a/assets/images/social/user-guide/template.png b/assets/images/social/user-guide/template.png
diff --git a/assets/images/social/user-guide/tips_for_curation.png b/assets/images/social/user-guide/tips_for_curation.png
diff --git a/assets/images/social/user-guide/variant_notation.png b/assets/images/social/user-guide/variant_notation.png
diff --git a/assets/javascripts/bundle.a7c05c9e.min.js b/assets/javascripts/bundle.a7c05c9e.min.js
diff --git a/assets/javascripts/bundle.a7c05c9e.min.js.map b/assets/javascripts/bundle.a7c05c9e.min.js.map
diff --git a/assets/javascripts/lunr/min/lunr.ar.min.js b/assets/javascripts/lunr/min/lunr.ar.min.js
diff --git a/assets/javascripts/lunr/min/lunr.da.min.js b/assets/javascripts/lunr/min/lunr.da.min.js
diff --git a/assets/javascripts/lunr/min/lunr.de.min.js b/assets/javascripts/lunr/min/lunr.de.min.js
diff --git a/assets/javascripts/lunr/min/lunr.du.min.js b/assets/javascripts/lunr/min/lunr.du.min.js