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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 234 53

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 47 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 51 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 14 1

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 18 5

Repositories

Showing 10 of 236 repositories
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 6 3 221 (1 issue needs help) 19 Updated Oct 30, 2024
  • koza Public

    Data transformation framework for LinkML data models

    monarch-initiative/koza’s past year of commit activity
    Python 47 BSD-3-Clause 4 33 (1 issue needs help) 3 Updated Oct 30, 2024
  • monarch_pheval Public
    monarch-initiative/monarch_pheval’s past year of commit activity
    Jinja 1 MIT 0 3 0 Updated Oct 30, 2024
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 234 CC-BY-4.0 53 405 (2 issues need help) 40 Updated Oct 30, 2024
  • phenopacket-store Public

    Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.

    monarch-initiative/phenopacket-store’s past year of commit activity
    Jupyter Notebook 15 BSD-3-Clause 4 16 0 Updated Oct 30, 2024
  • zfin-genotype-to-phenotype-ingest Public
    monarch-initiative/zfin-genotype-to-phenotype-ingest’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 30, 2024
  • pheval.llm Public

    Analysis of LLMs for Clinical Observations

    monarch-initiative/pheval.llm’s past year of commit activity
    Jupyter Notebook 4 BSD-3-Clause 0 7 1 Updated Oct 29, 2024
  • gpsea Public

    A Python library for discovery of genotype-phenotype associations

    monarch-initiative/gpsea’s past year of commit activity
    Python 4 MIT 1 23 0 Updated Oct 29, 2024
  • oai-monarch-plugin Public

    First pass at a thin wrapper around the Monarch API and ChatGPT plugin

    monarch-initiative/oai-monarch-plugin’s past year of commit activity
    Python 13 MIT 2 6 0 Updated Oct 29, 2024
  • oncoexporter Public

    Cancer data to GA4GH phenopacket

    monarch-initiative/oncoexporter’s past year of commit activity
    Jupyter Notebook 7 MIT 1 22 3 Updated Oct 29, 2024
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