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"Alternative symbol" synonyms & "Formerly" #132

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Commits on Sep 8, 2024

  1. Add alt & included symbol synonyms

    - Update: Now adding synonyms for alt & included symbols, w/ type of mondo#abbreviation.
    - Misc updates: Todo comments. Renamed variables/methods for consistency and accuracy. Refactored some things.
    joeflack4 committed Sep 8, 2024
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Commits on Sep 15, 2024

  1. Alternative symbol" synonyms & "Formerly

    - In previous commits, stated that this would also include 'included' symbols, but for now we have decided not to proceed with that.
    - Update: Now adding synonyms for alternative symbols, w/ type of mondo#abbreviation.
    - Update: Now stripping the text ', INCLUDED' from symbols. Previously was only doing for titles.
    - Update: For included & alternative titles/symbols ending in ', FORMERLY', these are being added as relatedSynonyms, and also being marked as owl:deprecated.
    - Misc updates: Updated some comments and codestyle.
    joeflack4 committed Sep 15, 2024
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Commits on Sep 20, 2024

  1. Alternative symbol" synonyms & "Formerly

    - Bug fix: mondo#ABBREVIATION URI
    - Update: Typo and codestyle of cleanup_label()
    joeflack4 committed Sep 20, 2024
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Commits on Sep 22, 2024

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Commits on Sep 23, 2024

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  2. "Alternative symbol" synonyms & "Formerly"

    - Update: Docstring to make clearer
    - Update: Typo fix
    - Update: Now "former" included titles/symbols are also being processed
    joeflack4 committed Sep 23, 2024
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  4. "Alternative symbol" synonyms & "Formerly"

    - Update: Comments to improve clarity
    - Delete: redundant variable 'included_is_included', and refactored / recommented around that change.
    joeflack4 committed Sep 23, 2024
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Commits on Oct 12, 2024

  1. "Alternative symbol" synonyms & "Formerly"

    - Formerly: synonym pred: related -> exact
    - Formerly: owl:drepecated synonym annotation -> MONDO:omim_formerly
    joeflack4 committed Oct 12, 2024
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