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"Alternative symbol" synonyms & "Formerly" #132

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"Alternative symbol" synonyms & "Formerly" #132

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Commits on Sep 8, 2024

  1. Add alt & included symbol synonyms 

    - Update: Now adding synonyms for alt & included symbols, w/ type of mondo#abbreviation.
- Misc updates: Todo comments. Renamed variables/methods for consistency and accuracy. Refactored some things.
    @joeflack4
    joeflack4 committed Sep 8, 2024
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Commits on Sep 15, 2024

  1. Alternative symbol" synonyms & "Formerly 

    - In previous commits, stated that this would also include 'included' symbols, but for now we have decided not to proceed with that.
- Update: Now adding synonyms for alternative symbols, w/ type of mondo#abbreviation.
- Update: Now stripping the text ', INCLUDED' from symbols. Previously was only doing for titles.
- Update: For included & alternative titles/symbols ending in ', FORMERLY', these are being added as relatedSynonyms, and also being marked as owl:deprecated.
- Misc updates: Updated some comments and codestyle.
    @joeflack4
    joeflack4 committed Sep 15, 2024
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Commits on Sep 20, 2024

  1. Alternative symbol" synonyms & "Formerly 

    - Bug fix: mondo#ABBREVIATION URI
- Update: Typo and codestyle of cleanup_label()
    @joeflack4
    joeflack4 committed Sep 20, 2024
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Commits on Sep 22, 2024

  1. Merge branch 'main' into abbrevs-alt-n-included

    @joeflack4
    joeflack4 committed Sep 22, 2024
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Commits on Sep 23, 2024

  1. Merge branch 'main' into abbrevs-alt-n-included

    @joeflack4
    joeflack4 committed Sep 23, 2024
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  2. "Alternative symbol" synonyms & "Formerly" 

    - Update: Docstring to make clearer
- Update: Typo fix
- Update: Now "former" included titles/symbols are also being processed
    @joeflack4
    joeflack4 committed Sep 23, 2024
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  3. Merge branch 'anno-prop-dec-refactor' into abbrevs-alt-n-included

    @joeflack4
    joeflack4 committed Sep 23, 2024
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  4. "Alternative symbol" synonyms & "Formerly" 

    - Update: Comments to improve clarity
- Delete: redundant variable 'included_is_included', and refactored / recommented around that change.
    @joeflack4
    joeflack4 committed Sep 23, 2024
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Commits on Oct 12, 2024

  1. "Alternative symbol" synonyms & "Formerly" 

    - Formerly: synonym pred: related -> exact
- Formerly: owl:drepecated synonym annotation -> MONDO:omim_formerly
    @joeflack4
    joeflack4 committed Oct 12, 2024
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