- Class: Bioinformatician: lvl 5, System developer: lvl 5
- Background: Suburban adventurer
- Player name: Matilda
- Race: Human
- Alignment: Neutral good
- Languages: Common, Python, R, Nextflow, Perl
🤠
[She/Her]
Bioinformatician/System developer at NGI Uppsala, SciLifeLab.
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Uppsala University, SciLifeLab Genomics, NGI Uppsala
- Uppsala, Sweden
Pinned Loading
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Molmed/checkQC
Molmed/checkQC PublicCheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
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arteria-project/arteria-runfolder
arteria-project/arteria-runfolder PublicA webservice used to monitor runfolders from Illumina instruments and check what state they are in (e.g. ready to process or not).
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arteria-project/arteria-bcl2fastq
arteria-project/arteria-bcl2fastq PublicProvides a simple http-interface for Illumina bcl2fastq
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Molmed/seqreports
Molmed/seqreports PublicThis is a Nextflow pipeline for generating sequencing reports for the SNP&Seq Technology platform, NGI Uppsala, SciLifelab Genomics.
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174 contributions in the last year
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Contribution activity
March 2025
Created 1 commit in 1 repository
Reviewed 11 pull requests in 4 repositories
Molmed/irma-scripts
5 pull requests
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New script for staging BPA
This contribution was made on Mar 19
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Fix printing of 30x coverage threshold
This contribution was made on Mar 19
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Activated fastp for trimming and splitting files
This contribution was made on Mar 19
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Samplesheet creation now based on fastq organization by organize_flow…
This contribution was made on Mar 19
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Dataops 1014
This contribution was made on Mar 6
Molmed/checkQC
3 pull requests
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Implement undetermined percentage checks
This contribution was made on Mar 19
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Changed how index reads and non-index reads are identified in error m…
This contribution was made on Mar 14
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Implement unidentified index checker
This contribution was made on Mar 13
arteria-project/arteria
2 pull requests
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Corrected runfolder path returned by API
This contribution was made on Mar 14
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Converting state gotten from request to uppercase
This contribution was made on Mar 4
Molmed/projman_filler
1 pull request
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Dataops 832 olink cluster info
This contribution was made on Mar 19