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[Do not merge] PR for diff of DANDI vs. LINC #63

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[Do not merge] PR for diff of DANDI vs. LINC #63

wants to merge 170 commits into from

Commits on Nov 20, 2023

  1. bump more values

    Aaron Kanzer authored and Aaron Kanzer committed Nov 20, 2023
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  2. more progress

    Aaron Kanzer authored and Aaron Kanzer committed Nov 20, 2023
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  3. Merge pull request #1 from lincbrain/ak-linc 

    Modify dandi-cli to work as linc-cli
    @aaronkanzer
    aaronkanzer authored Nov 20, 2023
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  4. trivial change

    Aaron Kanzer authored and Aaron Kanzer committed Nov 20, 2023
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  5. try versioning correctly

    Aaron Kanzer authored and Aaron Kanzer committed Nov 20, 2023
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  6. bump

    Aaron Kanzer authored and Aaron Kanzer committed Nov 20, 2023
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Commits on Nov 22, 2023

  1. Draft: comment out problematic versioneer code

    Aaron Kanzer authored and Aaron Kanzer committed Nov 22, 2023
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Commits on Nov 27, 2023

  1. Revise dandi-cli to conform for linc-cli

    Aaron Kanzer authored and Aaron Kanzer committed Nov 27, 2023
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  2. remove unnecessary files

    Aaron Kanzer authored and Aaron Kanzer committed Nov 27, 2023
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Commits on Jan 10, 2024

  1. minor naming changes

    Aaron Kanzer authored and Aaron Kanzer committed Jan 10, 2024
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  2. more auditing of dandi to lincbrain renaming

    Aaron Kanzer authored and Aaron Kanzer committed Jan 10, 2024
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Commits on Jan 29, 2024

  1. Push temp progress from ak-comment branch

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  2. api change prior to branching

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  3. include dist temp to go back in time

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  4. New branch to resolve publishing

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  5. whooops

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  6. uncomment out versioneer

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  7. use dandi-cli setup

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  8. bump autorc file

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  9. resolve linting

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  10. trivial change

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  11. Merge pull request #7 from lincbrain/ak-new-publish 

    Revise versioneer and publishing steps
    @aaronkanzer
    aaronkanzer authored Jan 29, 2024
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  12. remove typo in autorc

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  13. Merge pull request #8 from lincbrain/ak-autorc 

    remove typo in autorc
    @aaronkanzer
    aaronkanzer authored Jan 29, 2024
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  14. trivial change

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  15. Merge pull request #9 from lincbrain/ak-temp 

    Trivial change to test labels and releases
    @aaronkanzer
    aaronkanzer authored Jan 29, 2024
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  16. trivial change x2

    Aaron Kanzer authored and Aaron Kanzer committed Jan 29, 2024
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  17. Merge pull request #10 from lincbrain/ak-release 

    Try release again with release label
    @aaronkanzer
    aaronkanzer authored Jan 29, 2024
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Commits on Jan 30, 2024

  1. Include permissions for actions bot

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  2. Merge pull request #11 from lincbrain/ak-perms 

    Include permissions for actions bot
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  3. Trivial change -- forgot labels

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  4. Merge pull request #12 from lincbrain/ak-forgot 

    Trivial change -- forgot labels
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  5. Include PR from main branch for GHA test

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  6. Merge pull request #13 from lincbrain/ak-pr-1 

    Include PR from main branch for GHA test
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  7. Clean changelog for tagging

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  8. Merge pull request #14 from lincbrain/ak-changelog 

    Clean changelog for tagging
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  9. trivial change for one more git tag

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  10. Trivial change with remote tags cleaned up

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  11. Merge pull request #15 from lincbrain/ak-tag 

    Trivial change with remote tags cleaned up
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  12. Update main branch for tagging

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  13. Merge pull request #16 from lincbrain/ak-one 

    Update main branch for tagging
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  14. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 30, 2024
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  15. Add naming suffix to circumvent PyPI historical sem var history

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  16. Merge pull request #17 from lincbrain/ak-name 

    Add naming suffix to circumvent PyPI historical sem var history
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  17. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 30, 2024
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  18. Conform to PEP versioning standards

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  19. Merge pull request #18 from lincbrain/ak-post 

    Conform to PEP versioning standards
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  20. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 30, 2024
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  21. use custom script to pep name files to upload

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  22. merge master

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  23. Merge pull request #19 from lincbrain/ak-dist 

    use custom script to pep name files to upload
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  24. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 30, 2024
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  25. revise versioning

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  26. Merge pull request #20 from lincbrain/ak-1 

    Revise versioning convention
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  27. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 30, 2024
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  28. Fix autorc

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  29. Merge pull request #21 from lincbrain/ak-rc 

    Fix autorc
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  30. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 30, 2024
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  31. Include proper PEP naming

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  32. Merge pull request #22 from lincbrain/ak-p1 

    Include proper PEP naming
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  33. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 30, 2024
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  34. use lincbrain release

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  35. Merge pull request #23 from lincbrain/ak-53 

    Use lincbrain release equivalent with dandi
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  36. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 30, 2024
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  37. more more trivial change

    Aaron Kanzer authored and Aaron Kanzer committed Jan 30, 2024
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  38. Merge pull request #24 from lincbrain/ak-54 

    More trivial change for new git tag
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  39. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 30, 2024
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  40. Route to lincbrain-cli for installation

    Aaron Kanzer committed Jan 30, 2024
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  41. include changelog

    Aaron Kanzer committed Jan 30, 2024
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  42. bump

    Aaron Kanzer committed Jan 30, 2024
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  43. Merge pull request #25 from lincbrain/ak-55 

    Route to lincbrain-cli for installation
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  44. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 30, 2024
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  45. naming convention in setup.py

    Aaron Kanzer committed Jan 30, 2024
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  46. Merge pull request #26 from lincbrain/ak-cli 

    naming convention in setup.py
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  47. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 30, 2024
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  48. remove changelog

    Aaron Kanzer committed Jan 30, 2024
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  49. Merge pull request #27 from lincbrain/ak-change 

    remove changelog
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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  50. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 30, 2024
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  51. Update readme for instructions, correct links

    Aaron Kanzer committed Jan 30, 2024
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  52. Merge pull request #28 from lincbrain/ak-readme-u 

    Update readme for instructions, correct links
    @aaronkanzer
    aaronkanzer authored Jan 30, 2024
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Commits on Jan 31, 2024

  1. Look into CLI test failures via GHA

    Aaron Kanzer committed Jan 31, 2024
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  2. update rules

    Aaron Kanzer committed Jan 31, 2024
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  3. Alter imports for linc-archive tests

    Aaron Kanzer authored and Aaron Kanzer committed Jan 31, 2024
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  4. Merge pull request #29 from lincbrain/ak-ci 

    Alter imports for linc-archive <> CLI integration tests
    @aaronkanzer
    aaronkanzer authored Jan 31, 2024
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  5. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 31, 2024
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  6. Resolve one other test import

    Aaron Kanzer authored and Aaron Kanzer committed Jan 31, 2024
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  7. Merge pull request #30 from lincbrain/ak-mark 

    Resolve one other test import for CLI integration tests
    @aaronkanzer
    aaronkanzer authored Jan 31, 2024
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  8. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 31, 2024
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  9. resolve build process with correct files

    Aaron Kanzer authored and Aaron Kanzer committed Jan 31, 2024
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  10. Merge pull request #31 from lincbrain/ak-mani 

    resolve build process with correct files
    @aaronkanzer
    aaronkanzer authored Jan 31, 2024
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  11. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jan 31, 2024
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  12. More test fixes for patching in test suite

    Aaron Kanzer authored and Aaron Kanzer committed Jan 31, 2024
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Commits on Feb 12, 2024

  1. Update DANDI_API_KEY to LINCBRAIN_API_KEY

    Aaron Kanzer authored and Aaron Kanzer committed Feb 12, 2024
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  2. Merge pull request #33 from lincbrain/ak-cli-name 

    Update DANDI_API_KEY to LINCBRAIN_API_KEY
    @aaronkanzer
    aaronkanzer authored Feb 12, 2024
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  3. Update CHANGELOG.md [skip ci]

    LINC Bot committed Feb 12, 2024
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  4. resolve CLI reference to staging

    Aaron Kanzer authored and Aaron Kanzer committed Feb 12, 2024
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  5. Merge pull request #34 from lincbrain/ak-stag 

    resolve CLI reference to URL to staging for upload
    @aaronkanzer
    aaronkanzer authored Feb 12, 2024
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  6. Update CHANGELOG.md [skip ci]

    LINC Bot committed Feb 12, 2024
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Commits on Feb 14, 2024

  1. Update messaging and root directory for lincbrain logs

    Aaron Kanzer authored and Aaron Kanzer committed Feb 14, 2024
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  2. Merge pull request #35 from lincbrain/ak-word 

    Update messaging and root directory for lincbrain logs
    @aaronkanzer
    aaronkanzer authored Feb 14, 2024
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  3. Update CHANGELOG.md [skip ci]

    LINC Bot committed Feb 14, 2024
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  4. Merge 0.59.1 of dandi-cli into linc-cli

    Aaron Kanzer authored and Aaron Kanzer committed Feb 14, 2024
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  5. Trivial change to update LINC release from dandi-0.59-1

    Aaron Kanzer authored and Aaron Kanzer committed Feb 14, 2024
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  6. Merge pull request #36 from lincbrain/ak-0-6 

    Trivial change to update LINC release from dandi-0.59-1
    @aaronkanzer
    aaronkanzer authored Feb 14, 2024
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  7. Update CHANGELOG.md [skip ci]

    LINC Bot committed Feb 14, 2024
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  8. Change naming conventions in CLI tool to match LINC

    Aaron Kanzer authored and Aaron Kanzer committed Feb 14, 2024
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  9. Merge pull request #37 from lincbrain/ak-naming 

    Change naming conventions in CLI tool to match LINC
    @aaronkanzer
    aaronkanzer authored Feb 14, 2024
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  10. Update CHANGELOG.md [skip ci]

    LINC Bot committed Feb 14, 2024
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Commits on Mar 13, 2024

  1. Merge upstream changes from dandi-cli for pydantic 2.0

    Aaron Kanzer authored and Aaron Kanzer committed Mar 13, 2024
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  2. Trivial change to bump linc-cli to include pydantic 2 updates

    Aaron Kanzer authored and Aaron Kanzer committed Mar 13, 2024
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  3. Merge pull request #38 from lincbrain/ak-pydantic 

    Trivial change to bump linc-cli to include pydantic 2 updates
    @aaronkanzer
    aaronkanzer authored Mar 13, 2024
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  4. Update CHANGELOG.md [skip ci]

    LINC Bot committed Mar 13, 2024
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  5. Refresh permissions on pypi

    Aaron Kanzer authored and Aaron Kanzer committed Mar 13, 2024
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  6. Merge pull request #39 from lincbrain/ak-2 

    Refresh permissions on pypi
    @aaronkanzer
    aaronkanzer authored Mar 13, 2024
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  7. Update CHANGELOG.md [skip ci]

    LINC Bot committed Mar 13, 2024
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  8. Include new token for PyPI push

    Aaron Kanzer authored and Aaron Kanzer committed Mar 13, 2024
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  9. Merge pull request #40 from lincbrain/ak-new 

    Include new token for PyPI push
    @aaronkanzer
    aaronkanzer authored Mar 13, 2024
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  10. Update CHANGELOG.md [skip ci]

    LINC Bot committed Mar 13, 2024
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Commits on Apr 9, 2024

  1. Include explicit auth call on move cmd

    Aaron Kanzer authored and Aaron Kanzer committed Apr 9, 2024
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  2. Include logic to properly authenticate a user upon the move command

    Aaron Kanzer authored and Aaron Kanzer committed Apr 9, 2024
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  3. cleanup

    Aaron Kanzer authored and Aaron Kanzer committed Apr 9, 2024
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Commits on Apr 10, 2024

  1. Merge pull request #42 from lincbrain/ak-auth-move 

    Include logic to properly authenticate a user upon the move command
    @aaronkanzer
    aaronkanzer authored Apr 10, 2024
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Commits on Jun 6, 2024

  1. Update badges on readme

    @kabilar
    kabilar committed Jun 6, 2024
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  2. Update readme links from dandi

    @kabilar
    kabilar committed Jun 6, 2024
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  3. Fix spelling

    @kabilar
    kabilar committed Jun 6, 2024
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Commits on Jul 18, 2024

  1. Temp: local updates

    Aaron Kanzer authored and Aaron Kanzer committed Jul 18, 2024
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  2. temp bump on local version

    Aaron Kanzer authored and Aaron Kanzer committed Jul 18, 2024
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  3. revert docstring

    Aaron Kanzer authored and Aaron Kanzer committed Jul 18, 2024
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  4. Revert "revert docstring" 

    This reverts commit 81639be.
    Aaron Kanzer authored and Aaron Kanzer committed Jul 18, 2024
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  5. revert correctly

    Aaron Kanzer authored and Aaron Kanzer committed Jul 18, 2024
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  6. Merge pull request #49 from lincbrain/ak-auth-move 

    Pin dandischema to 0.10.1 to resolve API /info schema version match
    @aaronkanzer
    aaronkanzer authored Jul 18, 2024
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  7. Merge pull request #46 from kabilar/readme2 

    Update readme links and fix spelling
    @aaronkanzer
    aaronkanzer authored Jul 18, 2024
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  8. Removed conda installation instructions

    @kabilar
    kabilar authored Jul 18, 2024
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  9. Rename LINC Brain archive to LINC Data Platform

    @kabilar
    kabilar authored Jul 18, 2024
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Commits on Jul 19, 2024

  1. bump

    Aaron Kanzer authored and Aaron Kanzer committed Jul 19, 2024
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  2. bump again

    Aaron Kanzer authored and Aaron Kanzer committed Jul 19, 2024
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  3. remove unnecessary venv

    Aaron Kanzer authored and Aaron Kanzer committed Jul 19, 2024
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  4. Merge pull request #51 from lincbrain/ak-versioneer 

    Attempt to resolve versioneer compatibility issues
    @aaronkanzer
    aaronkanzer authored Jul 19, 2024
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  5. Merge pull request #50 from kabilar/readme2 

    Update readme
    @aaronkanzer
    aaronkanzer authored Jul 19, 2024
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  6. Update CHANGELOG.md [skip ci]

    LINC Bot committed Jul 19, 2024
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Commits on Jul 22, 2024

  1. Replace netlify staging url with staging.lincbrain.org url in CLI

    Aaron Kanzer authored and Aaron Kanzer committed Jul 22, 2024
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  2. Merge pull request #53 from lincbrain/ak-link 

    Replace Netlify staging url with staging.lincbrain.org url in CLI
    @aaronkanzer
    aaronkanzer authored Jul 22, 2024
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Commits on Jul 24, 2024

  1. Clean up for readthedocs generation

    Aaron Kanzer authored and Aaron Kanzer committed Jul 24, 2024
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  2. more progress for docs including ci

    Aaron Kanzer authored and Aaron Kanzer committed Jul 24, 2024
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  3. cleanup

    Aaron Kanzer authored and Aaron Kanzer committed Jul 24, 2024
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Commits on Aug 2, 2024

  1. Merge updates for zarr completion upstream in dandi cli

    Aaron Kanzer authored and Aaron Kanzer committed Aug 2, 2024
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  2. exclude specific changes

    Aaron Kanzer authored and Aaron Kanzer committed Aug 2, 2024
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  3. revise per Kabi's comments

    Aaron Kanzer authored and Aaron Kanzer committed Aug 2, 2024
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  4. Merge pull request #54 from lincbrain/ak-link 

    Edit and deploy readthedocs for LINC CLI
    @aaronkanzer
    aaronkanzer authored Aug 2, 2024
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  5. Merge branch 'ak-link' into ak-zarr-fix

    Aaron Kanzer authored and Aaron Kanzer committed Aug 2, 2024
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  6. Merge pull request #55 from lincbrain/ak-zarr-fix 

    Merge updates for zarr completion & doi completion upstream in dandi cli
    @aaronkanzer
    aaronkanzer authored Aug 2, 2024
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  7. trivial change to invoke deployment of 0.11.0

    Aaron Kanzer authored and Aaron Kanzer committed Aug 2, 2024
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  8. Merge pull request #56 from lincbrain/ak-trivial 

    trivial change to invoke deployment of 0.11.0
    @aaronkanzer
    aaronkanzer authored Aug 2, 2024
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  9. Update CHANGELOG.md [skip ci]

    LINC Bot committed Aug 2, 2024
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Commits on Aug 6, 2024

  1. Update etelemetry reference for lincbrain

    Aaron Kanzer authored and Aaron Kanzer committed Aug 6, 2024
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  2. Merge remote-tracking branch 'upstream/master' into ak-preserve-tree

    Aaron Kanzer authored and Aaron Kanzer committed Aug 6, 2024
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Commits on Aug 7, 2024

  1. Merge pull request #60 from lincbrain/ak-preserve-tree 

    Update lincbrain --preserve-tree flag from upstream dandi, resolve etelemetry error
    @kabilar
    kabilar authored Aug 7, 2024
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  2. Update CHANGELOG.md [skip ci]

    LINC Bot committed Aug 7, 2024
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Commits on Aug 26, 2024

  1. Include reference to appropriate docker test container

    Aaron Kanzer authored and Aaron Kanzer committed Aug 26, 2024
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  2. Merge pull request #62 from lincbrain/ak-docker 

    Include reference to appropriate docker test container
    @aaronkanzer
    aaronkanzer authored Aug 26, 2024
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  3. Update CHANGELOG.md [skip ci]

    LINC Bot committed Aug 26, 2024
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Commits on Nov 15, 2024

  1. Bump dandischema to 0.10.4

    Aaron Kanzer authored and Aaron Kanzer committed Nov 15, 2024
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  2. Merge pull request #64 from lincbrain/ak-10-4 

    Bump dandischema to 0.10.4
    @aaronkanzer
    aaronkanzer authored Nov 15, 2024
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  3. Trivial change to release new version

    Aaron Kanzer authored and Aaron Kanzer committed Nov 15, 2024
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  4. Merge pull request #65 from lincbrain/ak-t 

    Trivial change to release new version
    @aaronkanzer
    aaronkanzer authored Nov 15, 2024
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  5. Update CHANGELOG.md [skip ci]

    LINC Bot committed Nov 15, 2024
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Commits on Nov 19, 2024

  1. Update README to redirect to DANDI CLI

    Aaron Kanzer authored and Aaron Kanzer committed Nov 19, 2024
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  2. Update README.md 

    Co-authored-by: Kabilar Gunalan <[email protected]>
    @aaronkanzer @kabilar
    aaronkanzer and kabilar authored Nov 19, 2024
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  3. Merge pull request #67 from lincbrain/ak-dandi 

    Update README to redirect to DANDI CLI
    @aaronkanzer
    aaronkanzer authored Nov 19, 2024
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  4. Update CHANGELOG.md [skip ci]

    LINC Bot committed Nov 19, 2024
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