CellMap Project Team
Using computer vision and machine learning techniques to scalably detect subcellular structures, such as organelles, in datasets generated with next-gen vEM
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- United States of America
- https://www.janelia.org/project-team/cellmap
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- cellmap-segmentation-challenge Public
Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for training 2D and 3D models, workflows for prediction and post-processing on out-of-memory arrays, and evaluation of results against validation data.
janelia-cellmap/cellmap-segmentation-challenge’s past year of commit activity - cellmap-data Public
Utility for loading CellMap data for machine learning training, utilizing PyTorch, TensorStore, Xarray, and PyDantic.
janelia-cellmap/cellmap-data’s past year of commit activity - cellmap-n5-to-zarr Public
janelia-cellmap/cellmap-n5-to-zarr’s past year of commit activity - n5_to_ome_zarr Public
This program converts a .n5 file into a .zarr file with ome-ngff multiscale metadata .zattrs file
janelia-cellmap/n5_to_ome_zarr’s past year of commit activity - cellmap-models Public
Repository of model architectures and network weights used for CellMap segmentations.
janelia-cellmap/cellmap-models’s past year of commit activity
