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51 Open 43 Closed
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Issues list

Inquiry on calculating avg_distance_to_effective_5p_end
#111 opened Nov 8, 2024 by lykstudio
@apldx
1
bam-readcount total count differs from igv total count
#110 opened Oct 16, 2024 by aury98
1
result inconsistance
#109 opened Sep 26, 2024 by sheenaseven
Bam-readcount running for an extremely long time
#108 opened Sep 26, 2024 by lukaas33
1
NUL (\x00, ^@) and other control characters in output
#107 opened Jun 27, 2024 by Kaddea
4
Compilation Issue
#102 opened Jun 30, 2022 by KevinYie
3
Issue on installation
#100 opened Jun 16, 2022 by idoit4fun
fatal error: compilation failed
#99 opened May 5, 2022 by smoretti
1
bam-readcount build from release source code zip/tarball does not have a version number
#96 opened Jan 19, 2022 by apldx
how to get the site list for indels?
#92 opened Jan 17, 2022 by breezetown
3
Error when path_to_bam have bam in middle
#88 opened Oct 18, 2021 by sssimonyang
Inconsistent output
#87 opened Oct 14, 2021 by mnshgl0110
@apldx
2
Reason for low coverage output for deepseq data
#85 opened Sep 25, 2021 by YashaNazirB
5
[JOSS REVIEW] Minor edits to the github-based documentation
#81 opened Sep 15, 2021 by friedue
2 tasks
@apldx
3
compilation failed
#78 opened Aug 27, 2021 by lmanchon
5
Make Error for boost on MacOS
#77 opened Aug 10, 2021 by chintan-vora-tfs
4
Only counting multiple aligned reads for one chromosome with "-l *.bed" and "-q 0" parameters
#72 opened May 16, 2021 by Adglink
5
fpfilter.pl - failed to get readcounts for variant allele
#71 opened May 10, 2021 by Souzavgp
Getting the read names/ IDs?
#68 opened Jul 16, 2020 by ghost
4
Distance to both 5' and 3' ends
#67 opened Jun 4, 2020 by matnguyen
Update included samtools and boost
#65 opened Sep 15, 2019 by serge2016
3
Run without errors but failed to produce the site list
#64 opened Aug 27, 2019 by drtamermansour
8
missing avg_distance_to_effective_3p_end
#63 opened May 9, 2019 by stemangiola
Feature request: Request for unmapped region option
#62 opened Apr 5, 2019 by ankit4035
2
make test fails RunBamReadcount (python vs python2)
#60 opened Feb 27, 2019 by darked89
ProTip! What’s not been updated in a month: updated:<2024-11-15.