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@flavell-lab

Flavell Lab

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  1. AtanasKim-Cell2023 AtanasKim-Cell2023 Public

    Jupyter Notebook 10 1

  2. CePNEMAnalysis.jl CePNEMAnalysis.jl Public

    Jupyter Notebook 2

  3. CePNEM-web CePNEM-web Public

    Website displaying CePNEM data.

    HTML 2

  4. pytorch-3dunet pytorch-3dunet Public

    Forked from wolny/pytorch-3dunet

    3D U-Net model for volumetric semantic segmentation written in pytorch

    Jupyter Notebook 1 1

  5. CePNEM.jl CePNEM.jl Public

    Model of neural encoding of behavior, together with `Gen.jl` tools to fit it.

    Julia 1

  6. DeepReg DeepReg Public

    Forked from DeepRegNet/DeepReg

    Medical image registration using deep learning

    Python 1 1

Repositories

Showing 10 of 59 repositories
  • head_detector_unet2d Public

    UNet-based pipeline that segments object without clear edges from fluorescent microscopy images

    flavell-lab/head_detector_unet2d’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 24, 2026
  • preprocess_videos Public
    flavell-lab/preprocess_videos’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Feb 24, 2026
  • SAAV_Decoding Public
    flavell-lab/SAAV_Decoding’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 24, 2026
  • ManualCellLabeler Public

    an interactive GUI that quickly checks through the output of AutoCellLabeler given a neuron class of interest

    flavell-lab/ManualCellLabeler’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 20, 2026
  • ANTSUN-Unsupervised Public

    Unsupervised neuron labeling for C. elegans NeuroPAL animals.

    flavell-lab/ANTSUN-Unsupervised’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 11, 2026
  • AutoCellLabeler Public

    A Python package to automate NeuroPAL labeling via interfacing with a 3D-UNet.

    flavell-lab/AutoCellLabeler’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Feb 11, 2026
  • pytorch-3dunet Public Forked from wolny/pytorch-3dunet

    3D U-Net model for volumetric semantic segmentation written in pytorch

    flavell-lab/pytorch-3dunet’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 561 0 0 Updated Feb 11, 2026
  • FlavellPkg.jl Public
    flavell-lab/FlavellPkg.jl’s past year of commit activity
    Julia 0 GPL-3.0 1 0 0 Updated Feb 11, 2026
  • flv-c-setup Public

    flv-c server setup script

    flavell-lab/flv-c-setup’s past year of commit activity
    Shell 0 GPL-3.0 0 1 0 Updated Feb 11, 2026
  • ANTSUN Public
    flavell-lab/ANTSUN’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 1 Updated Feb 11, 2026
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