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1. msmtools msmtools Public

   Forked from markovmodel/msmtools

   Tools for estimating and analyzing Markov state models

   Python

2. preprocess_videos preprocess_videos Public

   efficient preprocessing of large microscopy video data, optimized for GPU acceleration using JAX and CUDA

   Jupyter Notebook

3. flavell-lab/NSM_5HTR_analysis flavell-lab/NSM_5HTR_analysis Public

   Data and code for making Figure 6 and 7 of this paper:

   Jupyter Notebook 1

4. flavell-lab/flv-c-setup flavell-lab/flv-c-setup Public

   flv-c server setup script

   Shell

5. dikang13.github.io dikang13.github.io Public

   personal website

   HTML

6. head_detector_unet2d head_detector_unet2d Public

   UNet-based pipeline that segments object without clear edges from fluorescent microscopy images

   Jupyter Notebook