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Chung Lab

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  1. pystripe pystripe Public

    An image processing package for removing streaks from SPIM images

    Jupyter Notebook 32 18

  2. nuggt nuggt Public

    NeUroGlancer Ground Truth - annotate cell centers

    Python 9 7

  3. scout scout Public

    Multiscale hyperdimensional phentypic analysis of organoids

    Jupyter Notebook 9 3

  4. leica2tif leica2tif Public

    A quick command-line tool to convert Leica files to TIF.

    Python 8 1

  5. pavlidis pavlidis Public

    The Pavlidis algorithm for contour tracing

    Python 6 1

  6. bmtrap_2021 bmtrap_2021 Public

    Jupyter Notebook 5 1

Repositories

Showing 10 of 38 repositories
  • morphet Public
    Jupyter Notebook 0 1 0 0 Updated Nov 1, 2024
  • tsv Public

    Library to render terastitched volumes

    Python 0 MIT 1 1 0 Updated Jun 8, 2024
  • pystripe Public

    An image processing package for removing streaks from SPIM images

    Jupyter Notebook 32 MIT 18 1 1 Updated May 14, 2024
  • precomputed-tif Public

    A simple utility to generate a precomputed data source as TIF files along with a simple HTTP server of those files.

    Python 2 MIT 2 0 0 Updated Mar 25, 2024
  • nuggt Public

    NeUroGlancer Ground Truth - annotate cell centers

    Python 9 MIT 7 1 0 Updated Dec 15, 2023
  • phathom Public

    Phenotypic analysis of brain tissue at single-cell resolution

    Jupyter Notebook 2 MIT 1 0 0 Updated Dec 5, 2023
  • unslice Public
    Jupyter Notebook 0 MIT 1 0 0 Updated May 5, 2023
  • axon-centerline-detection Public Forked from mit-ll/axon-centerline-detection
    Python 0 BSD-2-Clause 1 0 0 Updated May 4, 2023
  • scout Public

    Multiscale hyperdimensional phentypic analysis of organoids

    Jupyter Notebook 9 MIT 3 0 0 Updated Feb 10, 2023
  • rigid-rotate Public

    A React web-app for rotating two volumes into rough alignment

    JavaScript 0 MIT 0 0 23 Updated Jan 4, 2023
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