test

broadinstitute · Jan 21, 2025 · d64ad4d · d64ad4d
1 parent ef09ec9
commit d64ad4d
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/pipelines/skylab/atac/atac.wdl b/pipelines/skylab/atac/atac.wdl
@@ -180,15 +180,15 @@ workflow ATAC {
   # if peakcalling task not called set peakcall_h5ad to null
   File peakcall_h5ad = snap_metrics_atac
   if (peak_calling) {
-    File peakcall_h5ad = PeakCalling.peaks_h5ad
+     peakcall_h5ad = PeakCalling.peaks_h5ad
   }
 
   output {
     File bam_aligned_output = bam_aligned_output_atac
     File fragment_file = fragment_file_atac
     File snap_metrics = snap_metrics_atac
     File library_metrics_file = library_metrics
-    File peakcall_h5ad_file = peakcall_h5ad
+    File? peakcall_h5ad_file = peakcall_h5ad
   }
 }