Skip to content
@broadinstitute

Broad Institute

Broad Institute of MIT and Harvard

Pinned Loading

  1. gatk gatk Public

    Official code repository for GATK versions 4 and up

    Java 1.7k 594

  2. picard picard Public

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java 984 368

  3. cromwell cromwell Public

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Scala 998 361

Repositories

Showing 10 of 1319 repositories
  • data-registry Public
    broadinstitute/data-registry’s past year of commit activity
    Vue 0 BSD-3-Clause 1 0 9 Updated Nov 22, 2024
  • data-registry-api Public
    broadinstitute/data-registry-api’s past year of commit activity
    Python 1 BSD-3-Clause 1 0 0 Updated Nov 21, 2024
  • molecular-data-provider Public

    Molecular Data Provider

    broadinstitute/molecular-data-provider’s past year of commit activity
    Python 11 MIT 8 3 5 Updated Nov 21, 2024
  • viral-pipelines Public

    viral-ngs: complete pipelines

    broadinstitute/viral-pipelines’s past year of commit activity
    WDL 61 27 23 16 Updated Nov 21, 2024
  • seqr-loading-pipelines Public

    hail-based pipelines for annotating variant callsets and exporting them to elasticsearch

    broadinstitute/seqr-loading-pipelines’s past year of commit activity
    Python 22 MIT 20 31 (1 issue needs help) 5 Updated Nov 21, 2024
  • depmap-portal Public

    Code for the DepMap portal at depmap.org

    broadinstitute/depmap-portal’s past year of commit activity
    Python 7 BSD-2-Clause 1 0 6 Updated Nov 21, 2024
  • cms2-work Public

    Gather in one place various repos and files related to CMS2.0 work.

    broadinstitute/cms2-work’s past year of commit activity
    Python 1 Apache-2.0 3 0 0 Updated Nov 21, 2024
  • rawls Public

    Rawls service for DSDE

    broadinstitute/rawls’s past year of commit activity
    Scala 26 BSD-3-Clause 4 0 12 Updated Nov 21, 2024
  • ops-terra-utils Public
    broadinstitute/ops-terra-utils’s past year of commit activity
    Python 3 0 0 1 Updated Nov 21, 2024
  • kpt-packages Public

    A Catalog of Kpt packages and Blueprints

    broadinstitute/kpt-packages’s past year of commit activity
    1 MIT 0 0 0 Updated Nov 21, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…