Check ITRB Test Translator testing #184

Workflow file for this run

.github/workflows/debug2-bdd_test.yml at 695b397

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# This workflow was programmed to:
	# 1. be triggered manually (on: workflow_dispatch:), see https://docs.github.com/en/actions/managing-workflow-runs/manually-running-a-workflow
	# 2. be triggered by cron scheduling (on: schedule:) to run at midnight UTC
	#
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Check ITRB Test Translator testing

	# Controls when the workflow will run
	on:
	# Triggers the workflow on cron event but only for the Test branch
	workflow_dispatch:
	schedule:
	- cron: '30 11,12,13,14,15,16,17,18,19,20,21,22,23,00,01,02,03,04,05,06,07,08,09,10 * * *' # hourly test (from 11AM to 10AM UTC)


	jobs:
	# This workflow contains a multiple jobs to test each transformer

	bigg_models:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/bigg_models.feature

	bindingdb:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/bindingdb.feature

	chebi:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/chebi.feature

	chembank:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/chembank.feature

	chembl:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/chembl.feature

	cmap:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/cmap.feature

	ctd:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/ctd.feature


	ctrp:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/ctrp.feature

	depmap:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/depmap.feature

	dgidb:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/dgidb.feature

	drugbank:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/drugbank.feature

	drugcentral:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/drugcentral.feature

	dsstoxdb:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/dsstoxdb.feature

	gelinea:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/gelinea.feature

	gelinea-trapi:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/gelinea-trapi.feature

	gtopdb:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/gtopdb.feature


	gwas:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/gwas.feature

	hgnc:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/hgnc.feature

	hmdb:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/hmdb.feature

	inxight_drugs:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/inxight_drugs.feature

	kinomescan:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/kinomescan.feature

	molecular_data_provider:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/molecular-data-provider.feature

	molepro-filters:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/molepro-filters.feature

	moleprodb:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/moleprodb.feature

	node-normalizer:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/node-normalizer.feature

	pharmgkb:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/pharmgkb.feature

	pharos:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/pharos.feature



	probeminer:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/probeminer.feature



	pubchem:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/pubchem.feature

	repurpose_hub:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/repurposing.feature

	rxnorm:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/rxnorm.feature

	sider:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/sider.feature


	stitch:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/stitch.feature

	string:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/string.feature

	trapi:
	runs-on: ubuntu-latest
	steps:
	- name: Git checkout
	uses: actions/checkout@v2
	with: { ref: test-test }

	- name: download all the required python modules
	run: pip install -r test/requirements.txt

	- name: Start the BDD testing of the checked out feature file
	run: behave test/features/trapi.feature

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Check ITRB Test Translator testing #184

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Check ITRB Test Translator testing #184

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Workflow file for this run