primus_old

Copy of Perl-based PRIMUS v1.9.0 for testing & benchmarking while PRIMUS 2.

GitHub link: https://github.com/washedgram/primus_old

Changes

Main Perl code (/bin/ scripts)

• Added improved Perl logging in primus_kickoff7.pl

Supplementary Perl code (/lib/perl_modules/PRIMUS scripts)

• Added helper.py for likelihood vector data file restructuring (to utilize ERSA estimates instead of built-in ones)
• Added logger.py for improved logging when running Python helper scripts
• Added improved Perl logging in predict_relationships_2d.pm

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• Edited IBD_file input method in predict_relationships_2d.pm