primus_old

Copy of Perl-based PRIMUS v1.9.0 for testing & benchmarking while PRIMUS 2.

GitHub link: https://github.com/washedgram/primus_old

Changes

Main Perl code (`/bin/` scripts)

Added improved Perl logging in primus_kickoff7.pl

Supplementary Perl code (`/lib/perl_modules/PRIMUS` scripts)

Added helper.py for likelihood vector data file restructuring (to utilize ERSA estimates instead of built-in ones)
Added logger.py for improved logging when running Python helper scripts
Added improved Perl logging in predict_relationships_2d.pm

Edited IBD_file input method in predict_relationships_2d.pm